Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Gm44616-201ENSMUST00000206417 1732 ntBASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Gm25406-201ENSMUST00000157599 105 ntBASIC16.4■□□□□ 0.22
Trub1Q8C0D0 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Trub1Q8C0D0 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Gm44454-201ENSMUST00000198541 138 ntBASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC16.39■□□□□ 0.21
Trub1Q8C0D0 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trub1Q8C0D0 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC16.38■□□□□ 0.21
Trub1Q8C0D0 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trub1Q8C0D0 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Trub1Q8C0D0 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trub1Q8C0D0 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC16.38■□□□□ 0.21
Trub1Q8C0D0 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC16.38■□□□□ 0.21
Trub1Q8C0D0 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trub1Q8C0D0 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Trub1Q8C0D0 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC16.38■□□□□ 0.21
Trub1Q8C0D0 Gm7977-201ENSMUST00000193787 748 ntBASIC16.38■□□□□ 0.21
Trub1Q8C0D0 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trub1Q8C0D0 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trub1Q8C0D0 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trub1Q8C0D0 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trub1Q8C0D0 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trub1Q8C0D0 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 AC127349.1-201ENSMUST00000224590 266 ntBASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trub1Q8C0D0 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trub1Q8C0D0 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trub1Q8C0D0 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trub1Q8C0D0 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trub1Q8C0D0 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trub1Q8C0D0 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
Trub1Q8C0D0 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trub1Q8C0D0 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trub1Q8C0D0 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trub1Q8C0D0 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trub1Q8C0D0 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC16.36■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms