Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Usp47Q8BY87 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Usp47Q8BY87 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp47Q8BY87 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC22.38■■□□□ 1.17
Usp47Q8BY87 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC22.38■■□□□ 1.17
Usp47Q8BY87 Gm5712-201ENSMUST00000199748 1043 ntBASIC22.38■■□□□ 1.17
Usp47Q8BY87 AC122024.2-201ENSMUST00000220086 871 ntBASIC22.38■■□□□ 1.17
Usp47Q8BY87 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp47Q8BY87 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Usp47Q8BY87 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
Usp47Q8BY87 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Usp47Q8BY87 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Usp47Q8BY87 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC22.37■■□□□ 1.17
Usp47Q8BY87 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
Usp47Q8BY87 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Usp47Q8BY87 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Usp47Q8BY87 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
Usp47Q8BY87 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Usp47Q8BY87 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Usp47Q8BY87 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Usp47Q8BY87 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC22.37■■□□□ 1.17
Usp47Q8BY87 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC22.37■■□□□ 1.17
Usp47Q8BY87 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC22.37■■□□□ 1.17
Usp47Q8BY87 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC22.37■■□□□ 1.17
Usp47Q8BY87 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC22.37■■□□□ 1.17
Usp47Q8BY87 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC22.37■■□□□ 1.17
Usp47Q8BY87 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC22.37■■□□□ 1.17
Usp47Q8BY87 AC154222.1-201ENSMUST00000223882 475 ntBASIC22.37■■□□□ 1.17
Usp47Q8BY87 Psmb5-202ENSMUST00000227257 622 ntBASIC22.37■■□□□ 1.17
Usp47Q8BY87 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Usp47Q8BY87 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Usp47Q8BY87 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
Usp47Q8BY87 Gm7669-201ENSMUST00000210184 1603 ntBASIC22.37■■□□□ 1.17
Usp47Q8BY87 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
Usp47Q8BY87 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
Usp47Q8BY87 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Usp47Q8BY87 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC22.36■■□□□ 1.17
Usp47Q8BY87 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC22.36■■□□□ 1.17
Usp47Q8BY87 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
Usp47Q8BY87 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Usp47Q8BY87 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC22.36■■□□□ 1.17
Usp47Q8BY87 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
Usp47Q8BY87 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Usp47Q8BY87 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC22.36■■□□□ 1.17
Usp47Q8BY87 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
Usp47Q8BY87 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
Usp47Q8BY87 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC22.36■■□□□ 1.17
Usp47Q8BY87 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC22.36■■□□□ 1.17
Usp47Q8BY87 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC22.36■■□□□ 1.17
Usp47Q8BY87 Gm5364-201ENSMUST00000216789 889 ntBASIC22.36■■□□□ 1.17
Usp47Q8BY87 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Usp47Q8BY87 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Usp47Q8BY87 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Usp47Q8BY87 AC153526.5-201ENSMUST00000218661 2147 ntBASIC22.35■■□□□ 1.17
Usp47Q8BY87 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
Usp47Q8BY87 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Usp47Q8BY87 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Usp47Q8BY87 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Usp47Q8BY87 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
Usp47Q8BY87 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Usp47Q8BY87 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC22.35■■□□□ 1.17
Usp47Q8BY87 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Usp47Q8BY87 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Usp47Q8BY87 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC22.34■■□□□ 1.17
Usp47Q8BY87 Gm26917-202ENSMUST00000192833 3329 ntBASIC22.34■■□□□ 1.17
Usp47Q8BY87 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Usp47Q8BY87 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC22.34■■□□□ 1.17
Usp47Q8BY87 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Usp47Q8BY87 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Usp47Q8BY87 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Usp47Q8BY87 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Usp47Q8BY87 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Usp47Q8BY87 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Usp47Q8BY87 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC22.34■■□□□ 1.17
Usp47Q8BY87 Gm11185-201ENSMUST00000117732 1007 ntBASIC22.34■■□□□ 1.17
Usp47Q8BY87 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Usp47Q8BY87 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Usp47Q8BY87 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC22.34■■□□□ 1.17
Usp47Q8BY87 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC22.34■■□□□ 1.17
Usp47Q8BY87 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC22.34■■□□□ 1.17
Usp47Q8BY87 AC147366.1-201ENSMUST00000227671 852 ntBASIC22.34■■□□□ 1.17
Usp47Q8BY87 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Usp47Q8BY87 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Usp47Q8BY87 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Usp47Q8BY87 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Usp47Q8BY87 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Usp47Q8BY87 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
Usp47Q8BY87 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Usp47Q8BY87 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Usp47Q8BY87 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Usp47Q8BY87 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Usp47Q8BY87 Gm14140-201ENSMUST00000119999 995 ntBASIC22.33■■□□□ 1.17
Usp47Q8BY87 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC22.33■■□□□ 1.17
Usp47Q8BY87 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Usp47Q8BY87 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
Usp47Q8BY87 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.16
Usp47Q8BY87 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
Usp47Q8BY87 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
Usp47Q8BY87 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
Usp47Q8BY87 AC122901.1-201ENSMUST00000214203 1790 ntBASIC22.32■■□□□ 1.16
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms