Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC18.74■□□□□ 0.59
Trim56Q80VI1 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
Trim56Q80VI1 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC18.74■□□□□ 0.59
Trim56Q80VI1 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Trim56Q80VI1 AC161829.1-201ENSMUST00000220298 281 ntBASIC18.74■□□□□ 0.59
Trim56Q80VI1 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim56Q80VI1 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim56Q80VI1 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC18.74■□□□□ 0.59
Trim56Q80VI1 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim56Q80VI1 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim56Q80VI1 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim56Q80VI1 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim56Q80VI1 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Trim56Q80VI1 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim56Q80VI1 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim56Q80VI1 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trim56Q80VI1 Gm18856-201ENSMUST00000178096 1374 ntBASIC18.73■□□□□ 0.59
Trim56Q80VI1 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim56Q80VI1 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim56Q80VI1 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trim56Q80VI1 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trim56Q80VI1 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim56Q80VI1 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC18.73■□□□□ 0.59
Trim56Q80VI1 Gm42473-201ENSMUST00000201056 2291 ntBASIC18.73■□□□□ 0.59
Trim56Q80VI1 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC18.73■□□□□ 0.59
Trim56Q80VI1 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim56Q80VI1 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim56Q80VI1 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
Trim56Q80VI1 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim56Q80VI1 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC18.73■□□□□ 0.59
Trim56Q80VI1 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim56Q80VI1 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim56Q80VI1 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim56Q80VI1 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC18.72■□□□□ 0.59
Trim56Q80VI1 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC18.72■□□□□ 0.59
Trim56Q80VI1 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
Trim56Q80VI1 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Trim56Q80VI1 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC18.72■□□□□ 0.59
Trim56Q80VI1 Mzt1-203ENSMUST00000227948 952 ntBASIC18.72■□□□□ 0.59
Trim56Q80VI1 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trim56Q80VI1 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim56Q80VI1 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trim56Q80VI1 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim56Q80VI1 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trim56Q80VI1 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trim56Q80VI1 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Trim56Q80VI1 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Trim56Q80VI1 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trim56Q80VI1 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC18.7■□□□□ 0.58
Trim56Q80VI1 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim56Q80VI1 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim56Q80VI1 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trim56Q80VI1 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim56Q80VI1 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trim56Q80VI1 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trim56Q80VI1 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Trim56Q80VI1 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC18.7■□□□□ 0.58
Trim56Q80VI1 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim56Q80VI1 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC18.7■□□□□ 0.58
Trim56Q80VI1 AC159106.1-201ENSMUST00000224421 690 ntBASIC18.7■□□□□ 0.58
Trim56Q80VI1 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim56Q80VI1 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Trim56Q80VI1 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim56Q80VI1 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC18.7■□□□□ 0.58
Trim56Q80VI1 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC18.7■□□□□ 0.58
Trim56Q80VI1 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC18.7■□□□□ 0.58
Trim56Q80VI1 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trim56Q80VI1 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim56Q80VI1 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC18.7■□□□□ 0.58
Trim56Q80VI1 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trim56Q80VI1 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim56Q80VI1 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trim56Q80VI1 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim56Q80VI1 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trim56Q80VI1 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim56Q80VI1 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim56Q80VI1 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Trim56Q80VI1 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim56Q80VI1 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms