Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rnf220Q6PDX6 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Gm12441-201ENSMUST00000121806 588 ntBASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Gm12382-201ENSMUST00000122005 922 ntBASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Gm37292-201ENSMUST00000192062 758 ntBASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rnf220Q6PDX6 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 BC037039-201ENSMUST00000192003 2205 ntBASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rnf220Q6PDX6 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Rnf220Q6PDX6 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rnf220Q6PDX6 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rnf220Q6PDX6 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Rnf220Q6PDX6 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Rnf220Q6PDX6 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Rnf220Q6PDX6 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rnf220Q6PDX6 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rnf220Q6PDX6 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Rnf220Q6PDX6 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Rnf220Q6PDX6 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rnf220Q6PDX6 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rnf220Q6PDX6 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rnf220Q6PDX6 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Rnf220Q6PDX6 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Rnf220Q6PDX6 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rnf220Q6PDX6 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms