Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb4Q6P8W9 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC16.65■□□□□ 0.26
Hmgb4Q6P8W9 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Hmgb4Q6P8W9 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.26
Hmgb4Q6P8W9 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb4Q6P8W9 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb4Q6P8W9 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb4Q6P8W9 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb4Q6P8W9 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb4Q6P8W9 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Hmgb4Q6P8W9 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb4Q6P8W9 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb4Q6P8W9 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC16.63■□□□□ 0.25
Hmgb4Q6P8W9 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb4Q6P8W9 Vti1a-206ENSMUST00000225529 1244 ntBASIC16.63■□□□□ 0.25
Hmgb4Q6P8W9 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb4Q6P8W9 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb4Q6P8W9 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb4Q6P8W9 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb4Q6P8W9 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb4Q6P8W9 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb4Q6P8W9 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb4Q6P8W9 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC16.63■□□□□ 0.25
Hmgb4Q6P8W9 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Hmgb4Q6P8W9 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb4Q6P8W9 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb4Q6P8W9 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Hmgb4Q6P8W9 Gm32996-201ENSMUST00000199828 1447 ntBASIC16.62■□□□□ 0.25
Hmgb4Q6P8W9 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Hmgb4Q6P8W9 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Hmgb4Q6P8W9 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Hmgb4Q6P8W9 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Hmgb4Q6P8W9 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Hmgb4Q6P8W9 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Hmgb4Q6P8W9 Gm7507-201ENSMUST00000183053 1008 ntBASIC16.62■□□□□ 0.25
Hmgb4Q6P8W9 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Hmgb4Q6P8W9 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Hmgb4Q6P8W9 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Hmgb4Q6P8W9 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Hmgb4Q6P8W9 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Hmgb4Q6P8W9 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Hmgb4Q6P8W9 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Hmgb4Q6P8W9 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Hmgb4Q6P8W9 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Hmgb4Q6P8W9 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC16.62■□□□□ 0.25
Hmgb4Q6P8W9 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Hmgb4Q6P8W9 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
Hmgb4Q6P8W9 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Hmgb4Q6P8W9 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Hmgb4Q6P8W9 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Hmgb4Q6P8W9 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Hmgb4Q6P8W9 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Hmgb4Q6P8W9 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Hmgb4Q6P8W9 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Hmgb4Q6P8W9 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Hmgb4Q6P8W9 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Hmgb4Q6P8W9 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Hmgb4Q6P8W9 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Hmgb4Q6P8W9 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
Hmgb4Q6P8W9 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Hmgb4Q6P8W9 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC16.61■□□□□ 0.25
Hmgb4Q6P8W9 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Hmgb4Q6P8W9 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Hmgb4Q6P8W9 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Hmgb4Q6P8W9 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Hmgb4Q6P8W9 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Hmgb4Q6P8W9 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Hmgb4Q6P8W9 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Hmgb4Q6P8W9 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 Gm1401-201ENSMUST00000122048 772 ntBASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC16.6■□□□□ 0.25
Hmgb4Q6P8W9 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC16.6■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms