Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
Sh3rf1Q69ZI1 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
Sh3rf1Q69ZI1 Actl10-202ENSMUST00000226583 1501 ntBASIC16.14■□□□□ 0.18
Sh3rf1Q69ZI1 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Sh3rf1Q69ZI1 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Sh3rf1Q69ZI1 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Sh3rf1Q69ZI1 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Sh3rf1Q69ZI1 Mir770-201ENSMUST00000103252 94 ntBASIC16.14■□□□□ 0.17
Sh3rf1Q69ZI1 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Sh3rf1Q69ZI1 Gm37722-201ENSMUST00000193757 208 ntBASIC16.14■□□□□ 0.17
Sh3rf1Q69ZI1 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Sh3rf1Q69ZI1 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Sh3rf1Q69ZI1 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Sh3rf1Q69ZI1 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Sh3rf1Q69ZI1 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Sh3rf1Q69ZI1 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Sh3rf1Q69ZI1 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Sh3rf1Q69ZI1 Asic1-205ENSMUST00000228185 1818 ntBASIC16.14■□□□□ 0.17
Sh3rf1Q69ZI1 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
Sh3rf1Q69ZI1 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Sh3rf1Q69ZI1 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC16.14■□□□□ 0.17
Sh3rf1Q69ZI1 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Sh3rf1Q69ZI1 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Sh3rf1Q69ZI1 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Sh3rf1Q69ZI1 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Sh3rf1Q69ZI1 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Sh3rf1Q69ZI1 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Sh3rf1Q69ZI1 Gm11860-201ENSMUST00000122346 1010 ntBASIC16.13■□□□□ 0.17
Sh3rf1Q69ZI1 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC16.13■□□□□ 0.17
Sh3rf1Q69ZI1 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Sh3rf1Q69ZI1 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Sh3rf1Q69ZI1 Gfra2-202ENSMUST00000227633 1480 ntBASIC16.13■□□□□ 0.17
Sh3rf1Q69ZI1 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC16.13■□□□□ 0.17
Sh3rf1Q69ZI1 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC16.13■□□□□ 0.17
Sh3rf1Q69ZI1 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Sh3rf1Q69ZI1 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Sh3rf1Q69ZI1 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Sh3rf1Q69ZI1 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Sh3rf1Q69ZI1 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Sh3rf1Q69ZI1 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Sh3rf1Q69ZI1 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
Sh3rf1Q69ZI1 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf1Q69ZI1 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf1Q69ZI1 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf1Q69ZI1 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf1Q69ZI1 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf1Q69ZI1 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf1Q69ZI1 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf1Q69ZI1 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf1Q69ZI1 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC16.12■□□□□ 0.17
Sh3rf1Q69ZI1 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf1Q69ZI1 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf1Q69ZI1 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf1Q69ZI1 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf1Q69ZI1 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf1Q69ZI1 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf1Q69ZI1 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf1Q69ZI1 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf1Q69ZI1 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf1Q69ZI1 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf1Q69ZI1 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sh3rf1Q69ZI1 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Mir3081-201ENSMUST00000175305 84 ntBASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Sh3rf1Q69ZI1 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf1Q69ZI1 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf1Q69ZI1 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf1Q69ZI1 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf1Q69ZI1 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf1Q69ZI1 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
Sh3rf1Q69ZI1 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf1Q69ZI1 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC16.1■□□□□ 0.17
Sh3rf1Q69ZI1 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC16.1■□□□□ 0.17
Sh3rf1Q69ZI1 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf1Q69ZI1 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Sh3rf1Q69ZI1 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 66.9 ms