Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
ShhQ62226 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC14.81□□□□□ -0.04
ShhQ62226 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Gm5421-201ENSMUST00000181698 2354 ntBASIC14.81□□□□□ -0.04
ShhQ62226 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC14.81□□□□□ -0.04
ShhQ62226 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
ShhQ62226 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC14.8□□□□□ -0.04
ShhQ62226 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
ShhQ62226 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ShhQ62226 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ShhQ62226 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ShhQ62226 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ShhQ62226 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ShhQ62226 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
ShhQ62226 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ShhQ62226 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ShhQ62226 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC14.8□□□□□ -0.04
ShhQ62226 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ShhQ62226 Rprl3-201ENSMUST00000157400 290 ntBASIC14.8□□□□□ -0.04
ShhQ62226 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ShhQ62226 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
ShhQ62226 AC160338.1-201ENSMUST00000214232 705 ntBASIC14.8□□□□□ -0.04
ShhQ62226 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ShhQ62226 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
ShhQ62226 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
ShhQ62226 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ShhQ62226 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ShhQ62226 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ShhQ62226 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ShhQ62226 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
ShhQ62226 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
ShhQ62226 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
ShhQ62226 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ShhQ62226 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ShhQ62226 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
ShhQ62226 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ShhQ62226 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC14.79□□□□□ -0.04
ShhQ62226 AC131586.3-201ENSMUST00000228355 1367 ntBASIC14.79□□□□□ -0.04
ShhQ62226 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ShhQ62226 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ShhQ62226 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ShhQ62226 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
ShhQ62226 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ShhQ62226 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ShhQ62226 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
ShhQ62226 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ShhQ62226 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ShhQ62226 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
ShhQ62226 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
ShhQ62226 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC14.78□□□□□ -0.04
ShhQ62226 Zkscan4-202ENSMUST00000225845 1506 ntBASIC14.78□□□□□ -0.04
ShhQ62226 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
ShhQ62226 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC14.78□□□□□ -0.04
ShhQ62226 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC14.78□□□□□ -0.04
ShhQ62226 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
ShhQ62226 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
ShhQ62226 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
ShhQ62226 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC14.78□□□□□ -0.04
ShhQ62226 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ShhQ62226 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ShhQ62226 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
ShhQ62226 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
ShhQ62226 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms