Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trav6-3Q5R1E6 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trav6-3Q5R1E6 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trav6-3Q5R1E6 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Trav6-3Q5R1E6 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC12.77□□□□□ -0.36
Trav6-3Q5R1E6 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trav6-3Q5R1E6 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trav6-3Q5R1E6 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trav6-3Q5R1E6 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trav6-3Q5R1E6 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC12.77□□□□□ -0.37
Trav6-3Q5R1E6 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Gm6433-201ENSMUST00000118634 875 ntBASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Gm11860-201ENSMUST00000122346 1010 ntBASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Mir6404-201ENSMUST00000183699 94 ntBASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trav6-3Q5R1E6 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Zkscan4-202ENSMUST00000225845 1506 ntBASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 AC114585.2-202ENSMUST00000228094 426 ntBASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav6-3Q5R1E6 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trav6-3Q5R1E6 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 51.9 ms