Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col27a1Q5QNQ9 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Col27a1Q5QNQ9 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col27a1Q5QNQ9 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col27a1Q5QNQ9 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col27a1Q5QNQ9 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Col27a1Q5QNQ9 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col27a1Q5QNQ9 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col27a1Q5QNQ9 Gm8318-201ENSMUST00000182954 872 ntBASIC15.21■□□□□ 0.03
Col27a1Q5QNQ9 Gm6007-201ENSMUST00000208170 823 ntBASIC15.21■□□□□ 0.03
Col27a1Q5QNQ9 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col27a1Q5QNQ9 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col27a1Q5QNQ9 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col27a1Q5QNQ9 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col27a1Q5QNQ9 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
Col27a1Q5QNQ9 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 AC124751.1-201ENSMUST00000222716 1408 ntBASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Gm9063-201ENSMUST00000223299 582 ntBASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col27a1Q5QNQ9 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Gm12138-201ENSMUST00000122180 951 ntBASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Gm10499-201ENSMUST00000174094 934 ntBASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 AL593843.1-201ENSMUST00000195891 145 ntBASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Gm13517-201ENSMUST00000120782 1495 ntBASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Wnt10b-206ENSMUST00000228546 2709 ntBASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col27a1Q5QNQ9 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC15.18■□□□□ 0.02
Col27a1Q5QNQ9 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col27a1Q5QNQ9 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col27a1Q5QNQ9 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col27a1Q5QNQ9 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col27a1Q5QNQ9 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC15.18■□□□□ 0.02
Col27a1Q5QNQ9 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC15.18■□□□□ 0.02
Col27a1Q5QNQ9 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
Col27a1Q5QNQ9 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col27a1Q5QNQ9 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC15.18■□□□□ 0.02
Col27a1Q5QNQ9 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col27a1Q5QNQ9 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col27a1Q5QNQ9 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col27a1Q5QNQ9 Gm5357-201ENSMUST00000212720 1924 ntBASIC15.18■□□□□ 0.02
Col27a1Q5QNQ9 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Col27a1Q5QNQ9 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col27a1Q5QNQ9 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Gm11543-201ENSMUST00000120758 370 ntBASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms