Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3aQ3ULJ3 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3aQ3ULJ3 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC16.68■□□□□ 0.26
Upf3aQ3ULJ3 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC16.68■□□□□ 0.26
Upf3aQ3ULJ3 Gm19164-201ENSMUST00000210667 640 ntBASIC16.68■□□□□ 0.26
Upf3aQ3ULJ3 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
Upf3aQ3ULJ3 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Upf3aQ3ULJ3 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3aQ3ULJ3 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3aQ3ULJ3 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3aQ3ULJ3 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3aQ3ULJ3 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Upf3aQ3ULJ3 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3aQ3ULJ3 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Upf3aQ3ULJ3 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3aQ3ULJ3 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3aQ3ULJ3 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3aQ3ULJ3 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Upf3aQ3ULJ3 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
Upf3aQ3ULJ3 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Best4-ps-201ENSMUST00000129783 1380 ntBASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Gm17271-201ENSMUST00000165535 355 ntBASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC16.67■□□□□ 0.26
Upf3aQ3ULJ3 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3aQ3ULJ3 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
Upf3aQ3ULJ3 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3aQ3ULJ3 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3aQ3ULJ3 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
Upf3aQ3ULJ3 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3aQ3ULJ3 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3aQ3ULJ3 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Upf3aQ3ULJ3 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3aQ3ULJ3 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC16.66■□□□□ 0.26
Upf3aQ3ULJ3 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3aQ3ULJ3 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3aQ3ULJ3 AC154572.2-201ENSMUST00000225105 997 ntBASIC16.66■□□□□ 0.26
Upf3aQ3ULJ3 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3aQ3ULJ3 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3aQ3ULJ3 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3aQ3ULJ3 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3aQ3ULJ3 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3aQ3ULJ3 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Upf3aQ3ULJ3 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC16.65■□□□□ 0.26
Upf3aQ3ULJ3 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3aQ3ULJ3 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Upf3aQ3ULJ3 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3aQ3ULJ3 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3aQ3ULJ3 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3aQ3ULJ3 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC16.65■□□□□ 0.26
Upf3aQ3ULJ3 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC16.65■□□□□ 0.26
Upf3aQ3ULJ3 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC16.65■□□□□ 0.26
Upf3aQ3ULJ3 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3aQ3ULJ3 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3aQ3ULJ3 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3aQ3ULJ3 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Upf3aQ3ULJ3 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3aQ3ULJ3 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3aQ3ULJ3 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3aQ3ULJ3 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC16.65■□□□□ 0.26
Upf3aQ3ULJ3 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Upf3aQ3ULJ3 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3aQ3ULJ3 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
Upf3aQ3ULJ3 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Upf3aQ3ULJ3 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 AC121598.2-201ENSMUST00000228376 2325 ntBASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3aQ3ULJ3 Gm13597-201ENSMUST00000121239 375 ntBASIC16.64■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms