Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Ddb1Q3U1J4 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddb1Q3U1J4 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddb1Q3U1J4 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddb1Q3U1J4 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Gm7336-201ENSMUST00000107041 1232 ntBASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddb1Q3U1J4 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddb1Q3U1J4 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddb1Q3U1J4 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddb1Q3U1J4 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddb1Q3U1J4 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC20.11■□□□□ 0.81
Ddb1Q3U1J4 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddb1Q3U1J4 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddb1Q3U1J4 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
Ddb1Q3U1J4 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Ddb1Q3U1J4 Gm12008-201ENSMUST00000117791 755 ntBASIC20.11■□□□□ 0.81
Ddb1Q3U1J4 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC20.11■□□□□ 0.81
Ddb1Q3U1J4 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Ddb1Q3U1J4 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Ddb1Q3U1J4 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddb1Q3U1J4 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddb1Q3U1J4 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Gm16198-201ENSMUST00000118766 670 ntBASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 AC127302.2-201ENSMUST00000215212 268 ntBASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddb1Q3U1J4 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddb1Q3U1J4 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddb1Q3U1J4 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddb1Q3U1J4 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddb1Q3U1J4 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms