Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC13.53□□□□□ -0.24
Col8a1Q00780 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC13.53□□□□□ -0.24
Col8a1Q00780 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC13.53□□□□□ -0.24
Col8a1Q00780 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col8a1Q00780 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col8a1Q00780 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col8a1Q00780 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col8a1Q00780 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col8a1Q00780 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col8a1Q00780 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col8a1Q00780 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC13.52□□□□□ -0.25
Col8a1Q00780 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col8a1Q00780 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC13.52□□□□□ -0.25
Col8a1Q00780 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC13.52□□□□□ -0.25
Col8a1Q00780 Gm44492-201ENSMUST00000197012 141 ntBASIC13.52□□□□□ -0.25
Col8a1Q00780 Gm45167-201ENSMUST00000208007 322 ntBASIC13.52□□□□□ -0.25
Col8a1Q00780 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC13.52□□□□□ -0.25
Col8a1Q00780 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col8a1Q00780 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col8a1Q00780 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col8a1Q00780 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col8a1Q00780 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col8a1Q00780 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col8a1Q00780 Gm43294-201ENSMUST00000202850 2490 ntBASIC13.52□□□□□ -0.25
Col8a1Q00780 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC13.52□□□□□ -0.25
Col8a1Q00780 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col8a1Q00780 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Col8a1Q00780 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Col8a1Q00780 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
Col8a1Q00780 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Col8a1Q00780 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Col8a1Q00780 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Col8a1Q00780 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col8a1Q00780 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col8a1Q00780 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Col8a1Q00780 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col8a1Q00780 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Col8a1Q00780 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col8a1Q00780 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col8a1Q00780 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col8a1Q00780 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col8a1Q00780 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col8a1Q00780 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC13.51□□□□□ -0.25
Col8a1Q00780 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col8a1Q00780 Gm27646-201ENSMUST00000183989 110 ntBASIC13.51□□□□□ -0.25
Col8a1Q00780 Gm27300-201ENSMUST00000184085 97 ntBASIC13.51□□□□□ -0.25
Col8a1Q00780 Gm27335-201ENSMUST00000184758 97 ntBASIC13.51□□□□□ -0.25
Col8a1Q00780 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col8a1Q00780 Gm5626-201ENSMUST00000222151 1058 ntBASIC13.51□□□□□ -0.25
Col8a1Q00780 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col8a1Q00780 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col8a1Q00780 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC13.51□□□□□ -0.25
Col8a1Q00780 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col8a1Q00780 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col8a1Q00780 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col8a1Q00780 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Col8a1Q00780 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col8a1Q00780 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Col8a1Q00780 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col8a1Q00780 Slc35b2-202ENSMUST00000223987 1766 ntBASIC13.5□□□□□ -0.25
Col8a1Q00780 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col8a1Q00780 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col8a1Q00780 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col8a1Q00780 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
Col8a1Q00780 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col8a1Q00780 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col8a1Q00780 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
Col8a1Q00780 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC13.5□□□□□ -0.25
Col8a1Q00780 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Col8a1Q00780 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC13.5□□□□□ -0.25
Col8a1Q00780 Gm9172-201ENSMUST00000212092 954 ntBASIC13.5□□□□□ -0.25
Col8a1Q00780 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col8a1Q00780 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col8a1Q00780 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Col8a1Q00780 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col8a1Q00780 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col8a1Q00780 Gm15743-202ENSMUST00000182690 1901 ntBASIC13.5□□□□□ -0.25
Col8a1Q00780 AL590614.2-201ENSMUST00000225374 1937 ntBASIC13.5□□□□□ -0.25
Col8a1Q00780 Ptprs-211ENSMUST00000223859 5588 ntBASIC13.5□□□□□ -0.25
Col8a1Q00780 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col8a1Q00780 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col8a1Q00780 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Col8a1Q00780 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC13.5□□□□□ -0.25
Col8a1Q00780 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col8a1Q00780 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Col8a1Q00780 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms