Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Lig3P97386 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Lig3P97386 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Lig3P97386 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lig3P97386 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lig3P97386 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lig3P97386 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lig3P97386 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lig3P97386 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Lig3P97386 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Lig3P97386 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Lig3P97386 Gm11779-201ENSMUST00000118541 368 ntBASIC17.3■□□□□ 0.36
Lig3P97386 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC17.3■□□□□ 0.36
Lig3P97386 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Lig3P97386 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Lig3P97386 Cmtm5-203ENSMUST00000227441 610 ntBASIC17.3■□□□□ 0.36
Lig3P97386 AC159093.1-201ENSMUST00000227779 380 ntBASIC17.3■□□□□ 0.36
Lig3P97386 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lig3P97386 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lig3P97386 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lig3P97386 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lig3P97386 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Lig3P97386 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lig3P97386 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Lig3P97386 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lig3P97386 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Lig3P97386 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lig3P97386 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lig3P97386 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC17.29■□□□□ 0.36
Lig3P97386 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lig3P97386 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
Lig3P97386 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lig3P97386 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lig3P97386 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lig3P97386 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Lig3P97386 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Lig3P97386 Gm43575-201ENSMUST00000196420 516 ntBASIC17.29■□□□□ 0.36
Lig3P97386 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC17.29■□□□□ 0.36
Lig3P97386 Gm10060-201ENSMUST00000212002 111 ntBASIC17.29■□□□□ 0.36
Lig3P97386 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Lig3P97386 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lig3P97386 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lig3P97386 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lig3P97386 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Lig3P97386 Gm36858-201ENSMUST00000194501 2391 ntBASIC17.29■□□□□ 0.36
Lig3P97386 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lig3P97386 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lig3P97386 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lig3P97386 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lig3P97386 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lig3P97386 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Lig3P97386 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lig3P97386 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Lig3P97386 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Lig3P97386 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
Lig3P97386 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lig3P97386 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lig3P97386 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lig3P97386 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC17.28■□□□□ 0.36
Lig3P97386 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC17.28■□□□□ 0.36
Lig3P97386 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lig3P97386 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lig3P97386 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lig3P97386 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Lig3P97386 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Lig3P97386 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Lig3P97386 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lig3P97386 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lig3P97386 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Lig3P97386 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Lig3P97386 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Lig3P97386 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Lig3P97386 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Lig3P97386 Gm16011-201ENSMUST00000121567 2662 ntBASIC17.27■□□□□ 0.36
Lig3P97386 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC17.27■□□□□ 0.36
Lig3P97386 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Lig3P97386 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC17.27■□□□□ 0.36
Lig3P97386 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lig3P97386 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Lig3P97386 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lig3P97386 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lig3P97386 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lig3P97386 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lig3P97386 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lig3P97386 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Lig3P97386 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC17.27■□□□□ 0.36
Lig3P97386 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC17.27■□□□□ 0.36
Lig3P97386 AC160338.1-201ENSMUST00000214232 705 ntBASIC17.27■□□□□ 0.36
Lig3P97386 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lig3P97386 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Lig3P97386 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lig3P97386 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Lig3P97386 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC17.27■□□□□ 0.36
Lig3P97386 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lig3P97386 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Lig3P97386 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Lig3P97386 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Lig3P97386 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Lig3P97386 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Lig3P97386 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms