Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb1P63158 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb1P63158 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Hmgb1P63158 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Hmgb1P63158 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Hmgb1P63158 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC17.49■□□□□ 0.39
Hmgb1P63158 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb1P63158 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb1P63158 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb1P63158 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC17.49■□□□□ 0.39
Hmgb1P63158 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Hmgb1P63158 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC17.49■□□□□ 0.39
Hmgb1P63158 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb1P63158 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC17.49■□□□□ 0.39
Hmgb1P63158 CT009713.7-201ENSMUST00000224689 571 ntBASIC17.49■□□□□ 0.39
Hmgb1P63158 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb1P63158 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb1P63158 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Hmgb1P63158 Wnt10b-206ENSMUST00000228546 2709 ntBASIC17.49■□□□□ 0.39
Hmgb1P63158 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb1P63158 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb1P63158 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb1P63158 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb1P63158 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb1P63158 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
Hmgb1P63158 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC17.49■□□□□ 0.39
Hmgb1P63158 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
Hmgb1P63158 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb1P63158 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb1P63158 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Hmgb1P63158 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Hmgb1P63158 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb1P63158 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb1P63158 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb1P63158 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb1P63158 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
Hmgb1P63158 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC17.48■□□□□ 0.39
Hmgb1P63158 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb1P63158 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb1P63158 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb1P63158 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC17.48■□□□□ 0.39
Hmgb1P63158 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb1P63158 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb1P63158 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb1P63158 Gm9987-201ENSMUST00000069768 567 ntBASIC17.48■□□□□ 0.39
Hmgb1P63158 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Hmgb1P63158 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb1P63158 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb1P63158 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb1P63158 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb1P63158 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC17.48■□□□□ 0.39
Hmgb1P63158 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb1P63158 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb1P63158 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Hmgb1P63158 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb1P63158 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb1P63158 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb1P63158 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb1P63158 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Hmgb1P63158 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb1P63158 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC17.47■□□□□ 0.39
Hmgb1P63158 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb1P63158 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb1P63158 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Hmgb1P63158 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb1P63158 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
Hmgb1P63158 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb1P63158 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb1P63158 AC163637.1-201ENSMUST00000215491 1894 ntBASIC17.47■□□□□ 0.39
Hmgb1P63158 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb1P63158 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb1P63158 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb1P63158 App-207ENSMUST00000227737 2827 ntBASIC17.47■□□□□ 0.39
Hmgb1P63158 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb1P63158 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb1P63158 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Hmgb1P63158 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb1P63158 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
Hmgb1P63158 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb1P63158 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb1P63158 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb1P63158 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Hmgb1P63158 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb1P63158 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb1P63158 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC17.46■□□□□ 0.39
Hmgb1P63158 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb1P63158 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb1P63158 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb1P63158 Mir6404-201ENSMUST00000183699 94 ntBASIC17.46■□□□□ 0.39
Hmgb1P63158 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC17.46■□□□□ 0.39
Hmgb1P63158 AC125350.1-201ENSMUST00000225115 903 ntBASIC17.46■□□□□ 0.39
Hmgb1P63158 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb1P63158 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
Hmgb1P63158 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Hmgb1P63158 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
Hmgb1P63158 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb1P63158 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC17.46■□□□□ 0.39
Hmgb1P63158 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb1P63158 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Hmgb1P63158 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms