Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC16.79■□□□□ 0.28
Shmt1P50431 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC16.79■□□□□ 0.28
Shmt1P50431 Gm4535-201ENSMUST00000182274 558 ntBASIC16.79■□□□□ 0.28
Shmt1P50431 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC16.79■□□□□ 0.28
Shmt1P50431 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC16.79■□□□□ 0.28
Shmt1P50431 Gm18622-201ENSMUST00000219361 595 ntBASIC16.79■□□□□ 0.28
Shmt1P50431 AC161829.1-201ENSMUST00000220298 281 ntBASIC16.79■□□□□ 0.28
Shmt1P50431 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shmt1P50431 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shmt1P50431 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC16.79■□□□□ 0.28
Shmt1P50431 Gm10355-201ENSMUST00000097146 517 ntBASIC16.79■□□□□ 0.28
Shmt1P50431 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shmt1P50431 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shmt1P50431 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC16.79■□□□□ 0.28
Shmt1P50431 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Shmt1P50431 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shmt1P50431 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shmt1P50431 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shmt1P50431 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shmt1P50431 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Shmt1P50431 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Shmt1P50431 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC16.78■□□□□ 0.28
Shmt1P50431 Gm18856-201ENSMUST00000178096 1374 ntBASIC16.78■□□□□ 0.28
Shmt1P50431 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Shmt1P50431 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Shmt1P50431 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Shmt1P50431 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Shmt1P50431 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Shmt1P50431 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Shmt1P50431 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Shmt1P50431 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
Shmt1P50431 Gm18733-201ENSMUST00000173950 856 ntBASIC16.78■□□□□ 0.28
Shmt1P50431 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC16.78■□□□□ 0.28
Shmt1P50431 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Shmt1P50431 AW822252-206ENSMUST00000208904 237 ntBASIC16.78■□□□□ 0.28
Shmt1P50431 AC117588.1-201ENSMUST00000228510 999 ntBASIC16.78■□□□□ 0.28
Shmt1P50431 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Shmt1P50431 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Shmt1P50431 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Shmt1P50431 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Shmt1P50431 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Shmt1P50431 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Shmt1P50431 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Shmt1P50431 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Shmt1P50431 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Shmt1P50431 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Shmt1P50431 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Shmt1P50431 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Shmt1P50431 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Shmt1P50431 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Shmt1P50431 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Shmt1P50431 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Shmt1P50431 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Shmt1P50431 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Shmt1P50431 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Shmt1P50431 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC16.77■□□□□ 0.28
Shmt1P50431 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Shmt1P50431 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Shmt1P50431 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Shmt1P50431 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Shmt1P50431 Gm18195-201ENSMUST00000207604 706 ntBASIC16.77■□□□□ 0.28
Shmt1P50431 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Shmt1P50431 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Shmt1P50431 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
Shmt1P50431 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Shmt1P50431 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Shmt1P50431 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Shmt1P50431 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Shmt1P50431 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Shmt1P50431 Gm5837-201ENSMUST00000191844 1369 ntBASIC16.77■□□□□ 0.27
Shmt1P50431 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Shmt1P50431 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Shmt1P50431 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Shmt1P50431 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Shmt1P50431 Ntrk2-205ENSMUST00000224402 2284 ntBASIC16.76■□□□□ 0.27
Shmt1P50431 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Shmt1P50431 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Shmt1P50431 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Shmt1P50431 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Shmt1P50431 Gm25990-201ENSMUST00000102440 86 ntBASIC16.76■□□□□ 0.27
Shmt1P50431 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC16.76■□□□□ 0.27
Shmt1P50431 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Shmt1P50431 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC16.76■□□□□ 0.27
Shmt1P50431 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Shmt1P50431 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Shmt1P50431 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC16.76■□□□□ 0.27
Shmt1P50431 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Shmt1P50431 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
Shmt1P50431 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Shmt1P50431 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Shmt1P50431 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Shmt1P50431 Grk6-207ENSMUST00000225925 2769 ntBASIC16.76■□□□□ 0.27
Shmt1P50431 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Shmt1P50431 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Shmt1P50431 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Shmt1P50431 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Shmt1P50431 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Shmt1P50431 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Shmt1P50431 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Shmt1P50431 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 57.6 ms