Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col18a1P39061 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Col18a1P39061 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
Col18a1P39061 Gm15163-201ENSMUST00000120749 1302 ntBASIC21.02■□□□□ 0.96
Col18a1P39061 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col18a1P39061 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Col18a1P39061 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
Col18a1P39061 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Col18a1P39061 Gm10499-201ENSMUST00000174094 934 ntBASIC21.02■□□□□ 0.96
Col18a1P39061 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC21.02■□□□□ 0.96
Col18a1P39061 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col18a1P39061 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
Col18a1P39061 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Col18a1P39061 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col18a1P39061 Gm5357-201ENSMUST00000212720 1924 ntBASIC21.01■□□□□ 0.95
Col18a1P39061 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col18a1P39061 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col18a1P39061 Gm12138-201ENSMUST00000122180 951 ntBASIC21.01■□□□□ 0.95
Col18a1P39061 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col18a1P39061 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Col18a1P39061 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col18a1P39061 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col18a1P39061 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Col18a1P39061 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col18a1P39061 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC21.01■□□□□ 0.95
Col18a1P39061 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col18a1P39061 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col18a1P39061 Gm22189-201ENSMUST00000103822 86 ntBASIC21■□□□□ 0.95
Col18a1P39061 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Col18a1P39061 Gm12859-201ENSMUST00000117834 427 ntBASIC21■□□□□ 0.95
Col18a1P39061 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC21■□□□□ 0.95
Col18a1P39061 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC21■□□□□ 0.95
Col18a1P39061 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC21■□□□□ 0.95
Col18a1P39061 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC21■□□□□ 0.95
Col18a1P39061 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC21■□□□□ 0.95
Col18a1P39061 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col18a1P39061 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col18a1P39061 Dmtn-207ENSMUST00000228001 2437 ntBASIC21■□□□□ 0.95
Col18a1P39061 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col18a1P39061 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC21■□□□□ 0.95
Col18a1P39061 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col18a1P39061 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC21■□□□□ 0.95
Col18a1P39061 Gm44719-201ENSMUST00000206404 149 ntBASIC21■□□□□ 0.95
Col18a1P39061 AC154239.3-201ENSMUST00000226933 674 ntBASIC21■□□□□ 0.95
Col18a1P39061 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC20.99■□□□□ 0.95
Col18a1P39061 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col18a1P39061 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Col18a1P39061 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Col18a1P39061 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col18a1P39061 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC20.99■□□□□ 0.95
Col18a1P39061 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Col18a1P39061 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Col18a1P39061 Gm27838-201ENSMUST00000184829 128 ntBASIC20.99■□□□□ 0.95
Col18a1P39061 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC20.99■□□□□ 0.95
Col18a1P39061 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Col18a1P39061 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col18a1P39061 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col18a1P39061 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col18a1P39061 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col18a1P39061 Gm11543-201ENSMUST00000120758 370 ntBASIC20.98■□□□□ 0.95
Col18a1P39061 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col18a1P39061 Gm44344-201ENSMUST00000200287 129 ntBASIC20.98■□□□□ 0.95
Col18a1P39061 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col18a1P39061 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col18a1P39061 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col18a1P39061 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Col18a1P39061 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Col18a1P39061 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col18a1P39061 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Col18a1P39061 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col18a1P39061 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col18a1P39061 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col18a1P39061 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col18a1P39061 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Col18a1P39061 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Col18a1P39061 Gm38225-201ENSMUST00000194001 393 ntBASIC20.96■□□□□ 0.95
Col18a1P39061 Gm6218-201ENSMUST00000219812 628 ntBASIC20.96■□□□□ 0.95
Col18a1P39061 Gm9899-201ENSMUST00000065519 555 ntBASIC20.96■□□□□ 0.95
Col18a1P39061 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Col18a1P39061 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col18a1P39061 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Col18a1P39061 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC20.96■□□□□ 0.95
Col18a1P39061 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col18a1P39061 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col18a1P39061 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC20.95■□□□□ 0.95
Col18a1P39061 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col18a1P39061 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col18a1P39061 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Col18a1P39061 Gm18049-201ENSMUST00000208909 581 ntBASIC20.95■□□□□ 0.94
Col18a1P39061 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC20.95■□□□□ 0.94
Col18a1P39061 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC20.95■□□□□ 0.94
Col18a1P39061 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Col18a1P39061 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col18a1P39061 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col18a1P39061 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col18a1P39061 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col18a1P39061 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col18a1P39061 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC20.95■□□□□ 0.94
Col18a1P39061 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col18a1P39061 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms