Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RaraP11416 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RaraP11416 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC17.21■□□□□ 0.35
RaraP11416 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RaraP11416 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC17.21■□□□□ 0.35
RaraP11416 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RaraP11416 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
RaraP11416 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RaraP11416 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RaraP11416 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RaraP11416 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RaraP11416 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
RaraP11416 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RaraP11416 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
RaraP11416 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RaraP11416 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RaraP11416 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
RaraP11416 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC17.2■□□□□ 0.34
RaraP11416 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RaraP11416 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RaraP11416 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RaraP11416 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC17.2■□□□□ 0.34
RaraP11416 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
RaraP11416 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
RaraP11416 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
RaraP11416 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RaraP11416 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC17.2■□□□□ 0.34
RaraP11416 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RaraP11416 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
RaraP11416 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RaraP11416 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RaraP11416 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RaraP11416 AC154412.1-201ENSMUST00000226540 2786 ntBASIC17.2■□□□□ 0.34
RaraP11416 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RaraP11416 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RaraP11416 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RaraP11416 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC17.2■□□□□ 0.34
RaraP11416 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
RaraP11416 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RaraP11416 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RaraP11416 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RaraP11416 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC17.19■□□□□ 0.34
RaraP11416 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
RaraP11416 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
RaraP11416 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RaraP11416 Krtap5-1-202ENSMUST00000188274 742 ntBASIC17.19■□□□□ 0.34
RaraP11416 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RaraP11416 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RaraP11416 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
RaraP11416 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RaraP11416 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RaraP11416 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RaraP11416 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RaraP11416 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RaraP11416 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RaraP11416 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
RaraP11416 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RaraP11416 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RaraP11416 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RaraP11416 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RaraP11416 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RaraP11416 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RaraP11416 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RaraP11416 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
RaraP11416 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
RaraP11416 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RaraP11416 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RaraP11416 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC17.18■□□□□ 0.34
RaraP11416 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
RaraP11416 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RaraP11416 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RaraP11416 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RaraP11416 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RaraP11416 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC17.18■□□□□ 0.34
RaraP11416 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RaraP11416 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
RaraP11416 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
RaraP11416 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RaraP11416 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RaraP11416 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RaraP11416 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RaraP11416 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
RaraP11416 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
RaraP11416 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RaraP11416 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RaraP11416 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
RaraP11416 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC17.17■□□□□ 0.34
RaraP11416 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RaraP11416 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RaraP11416 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RaraP11416 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
RaraP11416 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RaraP11416 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RaraP11416 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
RaraP11416 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC17.17■□□□□ 0.34
RaraP11416 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RaraP11416 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RaraP11416 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
RaraP11416 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RaraP11416 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms