Protein–RNA interactions for Protein: O88895

Hdac3, Histone deacetylase 3, mousemouse

Predictions only

Length 424 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hdac3O88895 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hdac3O88895 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hdac3O88895 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
Hdac3O88895 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hdac3O88895 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Hdac3O88895 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hdac3O88895 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Hdac3O88895 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC14.25□□□□□ -0.13
Hdac3O88895 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC14.25□□□□□ -0.13
Hdac3O88895 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
Hdac3O88895 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hdac3O88895 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC14.25□□□□□ -0.13
Hdac3O88895 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hdac3O88895 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hdac3O88895 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Hdac3O88895 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC14.25□□□□□ -0.13
Hdac3O88895 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hdac3O88895 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hdac3O88895 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hdac3O88895 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Hdac3O88895 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC14.25□□□□□ -0.13
Hdac3O88895 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Hdac3O88895 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hdac3O88895 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hdac3O88895 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hdac3O88895 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Hdac3O88895 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Hdac3O88895 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC14.24□□□□□ -0.13
Hdac3O88895 Gm44443-201ENSMUST00000204396 5633 ntBASIC14.24□□□□□ -0.13
Hdac3O88895 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hdac3O88895 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hdac3O88895 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Hdac3O88895 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC14.24□□□□□ -0.13
Hdac3O88895 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC14.24□□□□□ -0.13
Hdac3O88895 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Hdac3O88895 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hdac3O88895 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hdac3O88895 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC14.24□□□□□ -0.13
Hdac3O88895 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Hdac3O88895 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Hdac3O88895 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
Hdac3O88895 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hdac3O88895 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hdac3O88895 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Hdac3O88895 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hdac3O88895 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hdac3O88895 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hdac3O88895 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hdac3O88895 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hdac3O88895 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Hdac3O88895 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC14.23□□□□□ -0.13
Hdac3O88895 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC14.23□□□□□ -0.13
Hdac3O88895 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Gm25016-201ENSMUST00000158399 131 ntBASIC14.23□□□□□ -0.13
Hdac3O88895 Gm37722-201ENSMUST00000193757 208 ntBASIC14.23□□□□□ -0.13
Hdac3O88895 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC14.23□□□□□ -0.13
Hdac3O88895 Rubie-203ENSMUST00000227803 2430 ntBASIC14.23□□□□□ -0.13
Hdac3O88895 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Hdac3O88895 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
Hdac3O88895 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Hdac3O88895 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hdac3O88895 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Hdac3O88895 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hdac3O88895 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hdac3O88895 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Hdac3O88895 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hdac3O88895 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hdac3O88895 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hdac3O88895 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hdac3O88895 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Hdac3O88895 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Hdac3O88895 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Hdac3O88895 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 50.9 ms