Protein–RNA interactions for Protein: O55017

Cacna1b, Voltage-dependent N-type calcium channel subunit alpha-1B, mousemouse

Predictions only

Length 2,327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cacna1bO55017 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cacna1bO55017 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC15.29■□□□□ 0.04
Cacna1bO55017 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC15.29■□□□□ 0.04
Cacna1bO55017 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cacna1bO55017 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Cacna1bO55017 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cacna1bO55017 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC15.29■□□□□ 0.04
Cacna1bO55017 AC140397.2-201ENSMUST00000224213 834 ntBASIC15.29■□□□□ 0.04
Cacna1bO55017 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cacna1bO55017 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Cacna1bO55017 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Cacna1bO55017 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cacna1bO55017 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cacna1bO55017 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Cacna1bO55017 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cacna1bO55017 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cacna1bO55017 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cacna1bO55017 Gm11620-201ENSMUST00000118770 1845 ntBASIC15.29■□□□□ 0.04
Cacna1bO55017 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cacna1bO55017 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cacna1bO55017 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cacna1bO55017 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cacna1bO55017 Mir6990-201ENSMUST00000183724 91 ntBASIC15.28■□□□□ 0.04
Cacna1bO55017 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cacna1bO55017 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cacna1bO55017 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cacna1bO55017 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cacna1bO55017 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cacna1bO55017 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cacna1bO55017 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cacna1bO55017 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cacna1bO55017 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cacna1bO55017 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cacna1bO55017 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Cacna1bO55017 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cacna1bO55017 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC15.28■□□□□ 0.04
Cacna1bO55017 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC15.28■□□□□ 0.04
Cacna1bO55017 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cacna1bO55017 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cacna1bO55017 Gm11745-201ENSMUST00000121669 448 ntBASIC15.28■□□□□ 0.04
Cacna1bO55017 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC15.28■□□□□ 0.04
Cacna1bO55017 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC15.28■□□□□ 0.04
Cacna1bO55017 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC15.28■□□□□ 0.04
Cacna1bO55017 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC15.28■□□□□ 0.04
Cacna1bO55017 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cacna1bO55017 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC15.28■□□□□ 0.04
Cacna1bO55017 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC15.28■□□□□ 0.04
Cacna1bO55017 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
Cacna1bO55017 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cacna1bO55017 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cacna1bO55017 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC15.28■□□□□ 0.04
Cacna1bO55017 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cacna1bO55017 Gm5366-201ENSMUST00000215494 1338 ntBASIC15.28■□□□□ 0.04
Cacna1bO55017 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cacna1bO55017 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Cacna1bO55017 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cacna1bO55017 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
Cacna1bO55017 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Cacna1bO55017 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cacna1bO55017 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC15.27■□□□□ 0.04
Cacna1bO55017 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC15.27■□□□□ 0.04
Cacna1bO55017 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Cacna1bO55017 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cacna1bO55017 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cacna1bO55017 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC15.27■□□□□ 0.03
Cacna1bO55017 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Cacna1bO55017 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cacna1bO55017 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Cacna1bO55017 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC15.27■□□□□ 0.03
Cacna1bO55017 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Cacna1bO55017 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Cacna1bO55017 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cacna1bO55017 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Cacna1bO55017 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Cacna1bO55017 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Cacna1bO55017 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Cacna1bO55017 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cacna1bO55017 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Cacna1bO55017 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC15.27■□□□□ 0.03
Cacna1bO55017 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cacna1bO55017 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cacna1bO55017 Gm38318-201ENSMUST00000195769 1706 ntBASIC15.26■□□□□ 0.03
Cacna1bO55017 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cacna1bO55017 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cacna1bO55017 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cacna1bO55017 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cacna1bO55017 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC15.26■□□□□ 0.03
Cacna1bO55017 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cacna1bO55017 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cacna1bO55017 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cacna1bO55017 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cacna1bO55017 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cacna1bO55017 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cacna1bO55017 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cacna1bO55017 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC15.26■□□□□ 0.03
Cacna1bO55017 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cacna1bO55017 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC15.26■□□□□ 0.03
Cacna1bO55017 AC140375.2-201ENSMUST00000225283 584 ntBASIC15.26■□□□□ 0.03
Cacna1bO55017 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cacna1bO55017 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms