Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nr1i3O35627 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC17.08■□□□□ 0.33
Nr1i3O35627 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nr1i3O35627 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nr1i3O35627 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nr1i3O35627 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Nr1i3O35627 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Nr1i3O35627 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nr1i3O35627 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nr1i3O35627 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nr1i3O35627 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Nr1i3O35627 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
Nr1i3O35627 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Nr1i3O35627 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nr1i3O35627 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Nr1i3O35627 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nr1i3O35627 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Nr1i3O35627 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nr1i3O35627 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nr1i3O35627 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nr1i3O35627 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Nr1i3O35627 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Nr1i3O35627 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1i3O35627 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1i3O35627 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1i3O35627 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1i3O35627 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1i3O35627 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1i3O35627 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC17.07■□□□□ 0.32
Nr1i3O35627 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1i3O35627 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1i3O35627 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC17.07■□□□□ 0.32
Nr1i3O35627 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1i3O35627 Gm10231-201ENSMUST00000181584 441 ntBASIC17.07■□□□□ 0.32
Nr1i3O35627 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1i3O35627 Gm10175-202ENSMUST00000208752 441 ntBASIC17.07■□□□□ 0.32
Nr1i3O35627 AC130713.1-201ENSMUST00000228853 1096 ntBASIC17.07■□□□□ 0.32
Nr1i3O35627 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1i3O35627 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Nr1i3O35627 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1i3O35627 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1i3O35627 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1i3O35627 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1i3O35627 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1i3O35627 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1i3O35627 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Nr1i3O35627 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC17.06■□□□□ 0.32
Nr1i3O35627 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
Nr1i3O35627 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Gm7507-201ENSMUST00000183053 1008 ntBASIC17.06■□□□□ 0.32
Nr1i3O35627 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC17.06■□□□□ 0.32
Nr1i3O35627 Gm45328-201ENSMUST00000210942 917 ntBASIC17.06■□□□□ 0.32
Nr1i3O35627 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Nr1i3O35627 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC17.06■□□□□ 0.32
Nr1i3O35627 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Nr1i3O35627 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC17.06■□□□□ 0.32
Nr1i3O35627 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Nr1i3O35627 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC17.05■□□□□ 0.32
Nr1i3O35627 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Nr1i3O35627 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Nr1i3O35627 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Nr1i3O35627 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC17.05■□□□□ 0.32
Nr1i3O35627 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Nr1i3O35627 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Nr1i3O35627 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Nr1i3O35627 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Nr1i3O35627 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Nr1i3O35627 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC17.05■□□□□ 0.32
Nr1i3O35627 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC17.05■□□□□ 0.32
Nr1i3O35627 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Nr1i3O35627 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC17.05■□□□□ 0.32
Nr1i3O35627 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Nr1i3O35627 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Nr1i3O35627 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
Nr1i3O35627 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms