RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 GPR156Q8NFN8 814 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 CCL4L1Q8NHW4 92 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 ZNF592Q92610 1267 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 HDAC10Q969S8 669 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 SNF8Q96H20 258 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 NAT9Q9BTE0 207 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 DPEP2Q9H4A9 486 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 SUDS3Q9H7L9 328 aaPredicted RBP12.83□□□□□ -0.36
NEDD8-208ENST00000560427 CAAP1Q9H8G2 361 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 CHRAC1Q9NRG0 131 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 SYBUQ9NX95 663 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 TOR4AQ9NXH8 423 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 MRFAP1Q9Y605 127 aa12.83□□□□□ -0.36
NEDD8-208ENST00000560427 CNOT1A5YKK6 2376 aaKnown RBP12.83□□□□□ -0.36
NEDD8-208ENST00000560427 MYLKQ15746 1914 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 LY6G6EA0A0G2JKS1 128 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 FAM237BA0A1B0GVD1 139 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 EME2A4GXA9 379 aaPredicted RBP12.82□□□□□ -0.36
NEDD8-208ENST00000560427 EFCAB8A8MWE9 144 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 F8W8V4 182 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 CCL22O00626 93 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 AP2A2O94973 939 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 GOT2P00505 430 aaKnown RBP12.82□□□□□ -0.36
NEDD8-208ENST00000560427 GSTM1P09488 218 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 ACP5P13686 325 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 ZNF7P17097 686 aaPredicted RBP12.82□□□□□ -0.36
NEDD8-208ENST00000560427 NSG1P42857 185 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 ARSDP51689 593 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 TERF1P54274 439 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 GSTM4Q03013 218 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 C2orf54Q08AI8 447 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 DMPKQ09013 629 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 INSCQ1MX18 579 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 ZNF648Q5T619 568 aaPredicted RBP12.82□□□□□ -0.36
NEDD8-208ENST00000560427 KIAA0930Q6ICG6 404 aaPredicted RBP12.82□□□□□ -0.36
NEDD8-208ENST00000560427 HIBCHQ6NVY1 386 aaPredicted RBP12.82□□□□□ -0.36
NEDD8-208ENST00000560427 CASC4Q6P4E1 433 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 SLC30A9Q6PML9 568 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 CRTC3Q6UUV7 619 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 CHST15Q7LFX5 561 aaPredicted RBP12.82□□□□□ -0.36
NEDD8-208ENST00000560427 SERPINA9Q86WD7 417 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 C17orf82Q86X59 251 aaPredicted RBP12.82□□□□□ -0.36
NEDD8-208ENST00000560427 ZNF547Q8IVP9 402 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 SLC35F3Q8IY50 421 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 RASGEF1AQ8N9B8 481 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 KYQ8NBH2 561 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 OR4L1Q8NH43 312 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 ADAMTS14Q8WXS8 1223 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 LINC00615Q96LM1 132 aaPredicted RBP12.82□□□□□ -0.36
NEDD8-208ENST00000560427 ZNF778Q96MU6 729 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 TRIM51Q9BSJ1 452 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 RAB17Q9H0T7 212 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 VPS37BQ9H9H4 285 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 ARFGAP3Q9NP61 516 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 SLC2A6Q9UGQ3 507 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 PCYT1BQ9Y5K3 369 aaPredicted RBP12.82□□□□□ -0.36
NEDD8-208ENST00000560427 U3KQA8 63 aa12.82□□□□□ -0.36
NEDD8-208ENST00000560427 KIR2DS5A0A0G2JLQ3 304 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 A0A0G2JNG1 304 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 CCDC78A2IDD5 438 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 PRR19A6NJB7 356 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 OR5K4A6NMS3 321 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 B4DGG1 531 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 GOLGA8MH3BSY2 632 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 KIR2DS3K7RE56 304 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 NUDT21O43809 227 aaKnown RBP12.81□□□□□ -0.36
NEDD8-208ENST00000560427 NOBOXO60393 691 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 AVILO75366 819 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 USP1O94782 785 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 ADRB1P08588 477 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 PNLIPP16233 465 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 AK4P27144 223 aaPredicted RBP12.81□□□□□ -0.36
NEDD8-208ENST00000560427 CA5AP35218 305 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 TTPAP49638 278 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 PRLHRP49683 370 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 CTSCP53634 463 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 CRADDP78560 199 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 E2F1Q01094 437 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 FOXK2Q01167 660 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 CALCOCO2Q13137 446 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 DNAJC3Q13217 504 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 HLTFQ14527 1009 aaKnown RBP eCLIP12.81□□□□□ -0.36
NEDD8-208ENST00000560427 KIR2DS5Q14953 304 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 TCEA2Q15560 299 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 DBN1Q16643 649 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 C14orf28Q4W4Y0 310 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 FASTKD1Q53R41 847 aaKnown RBP12.81□□□□□ -0.36
NEDD8-208ENST00000560427 TAS2R42Q7RTR8 314 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 C11orf96Q7Z7L8 435 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 TMEM135Q86UB9 458 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 CCNJLQ8IV13 435 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 PDIK1LQ8N165 341 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 OR6P1Q8NGX9 317 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 WDR48Q8TAF3 677 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 ZDHHC1Q8WTX9 485 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 LRRC39Q96DD0 335 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 ERP44Q9BS26 406 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 CATSPERZQ9NTU4 200 aa12.81□□□□□ -0.36
NEDD8-208ENST00000560427 SPATS2LQ9NUQ6 558 aaKnown RBP12.81□□□□□ -0.36
NEDD8-208ENST00000560427 WHRNQ9P202 907 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms