RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 HINFPQ9BQA5 517 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 FERMT1Q9BQL6 677 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 FSD1LQ9BXM9 530 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 ADGRE3Q9BY15 652 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 ABCG8Q9H221 673 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 LRRC40Q9H9A6 602 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 ARNT2Q9HBZ2 717 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 MAGEE1Q9HCI5 957 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 BPIFA1Q9NP55 256 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 CASS4Q9NQ75 786 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 GPR27Q9NS67 375 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 SEMA4GQ9NTN9 838 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 NCDNQ9UBB6 729 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 ARL5AQ9Y689 179 aa9.78□□□□□ -0.84
CLK3-208ENST00000562626 COL27A1Q8IZC6 1860 aaPredicted RBP9.78□□□□□ -0.84
CLK3-208ENST00000562626 PCNX2A6NKB5 2137 aa9.77□□□□□ -0.84
CLK3-208ENST00000562626 GOLGA4Q13439 2230 aaKnown RBP9.77□□□□□ -0.85
CLK3-208ENST00000562626 A0A1B0GTW7 788 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 LNP1A1A4G5 178 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 FADS2P1A8MWK0 482 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 PRAMEF26H0Y7S4 382 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 GAPDHSO14556 408 aaPredicted RBP9.77□□□□□ -0.85
CLK3-208ENST00000562626 LDB2O43679 373 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 GDF9O60383 454 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 AVILO75366 819 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 ZNF189O75820 626 aaPredicted RBP9.77□□□□□ -0.85
CLK3-208ENST00000562626 ECEL1O95672 775 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 CFIP05156 583 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 PCCBP05166 539 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 APRTP07741 180 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 BPIP17213 487 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 CD38P28907 300 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 MAGEA6P43360 314 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 SPINT3P49223 89 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 RACK1P63244 317 aaKnown RBP9.77□□□□□ -0.85
CLK3-208ENST00000562626 CRADDP78560 199 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 DR1Q01658 176 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 ARHGEF7Q14155 803 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 POU6F1Q14863 301 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 TRADDQ15628 312 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 KIF19Q2TAC6 998 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 CCDC38Q502W7 563 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 CERCAMQ5T4B2 595 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 ALS2CLQ60I27 953 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 SLC23A3Q6PIS1 610 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 ABI3BPQ7Z7G0 1075 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 TRIM74Q86UV6 250 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 CAND1Q86VP6 1230 aaKnown RBP9.77□□□□□ -0.85
CLK3-208ENST00000562626 PNPLA1Q8N8W4 532 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 NOA1Q8NC60 698 aaKnown RBP9.77□□□□□ -0.85
CLK3-208ENST00000562626 OR13C4Q8NGS5 318 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 ASB12Q8WXK4 309 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 RUBCNQ92622 972 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 NUS1Q96E22 293 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 CCDC97Q96F63 343 aaPredicted RBP9.77□□□□□ -0.85
CLK3-208ENST00000562626 ZNF778Q96MU6 729 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 PWWP2AQ96N64 755 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 LENG8Q96PV6 779 aaPredicted RBP9.77□□□□□ -0.85
CLK3-208ENST00000562626 TRIM56Q9BRZ2 755 aaKnown RBP9.77□□□□□ -0.85
CLK3-208ENST00000562626 LGR4Q9BXB1 951 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 IL21RQ9HBE5 538 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 ZFYVE1Q9HBF4 777 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 AASDHPPTQ9NRN7 309 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 IL17CQ9P0M4 197 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 RNF14Q9UBS8 474 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 GMEB2Q9UKD1 530 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 TMPRSS11EQ9UL52 423 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 DMTF1Q9Y222 760 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 OR1A2Q9Y585 309 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 PCDHGA5Q9Y5G8 931 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 SNX11Q9Y5W9 270 aa9.77□□□□□ -0.85
CLK3-208ENST00000562626 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.77□□□□□ -0.85
CLK3-208ENST00000562626 ANKRD12Q6UB98 2062 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 ATRXP46100 2492 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 PTPRBP23467 1997 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 RP1P56715 2156 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 GOLGA8MH3BSY2 632 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 PSMD11O00231 422 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 ZNF500O60304 480 aaPredicted RBP9.76□□□□□ -0.85
CLK3-208ENST00000562626 BANF1O75531 89 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 ZNF806P0C7X5 589 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 PRSS56P0CW18 603 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 THEGLP0DJG4 465 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 ZNF30P17039 623 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 TPSB2P20231 275 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 AKT2P31751 481 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 ACTN2P35609 894 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 CTSKP43235 329 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 RPL21P46778 160 aaKnown RBP9.76□□□□□ -0.85
CLK3-208ENST00000562626 ZNF140P52738 457 aaPredicted RBP9.76□□□□□ -0.85
CLK3-208ENST00000562626 PFN3P60673 137 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 TMPRSS15P98073 1019 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 GRIK2Q13002 908 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 SGCGQ13326 291 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 INPP5AQ14642 412 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 LRRC14Q15048 493 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 PPP1R7Q15435 360 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 SHBQ15464 509 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 TPSAB1Q15661 275 aa9.76□□□□□ -0.85
CLK3-208ENST00000562626 DUOXA1Q1HG43 343 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms