RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 CD70P32970 193 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 GMPRP36959 345 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 ERVK-21P61565 698 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 TMPRSS15P98073 1019 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 TRAF2Q12933 501 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 CHI3L2Q15782 390 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 PLEKHG6Q3KR16 790 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 TAF1BQ53T94 588 aaPredicted RBP14.32□□□□□ -0.12
C9orf3-202ENST00000297979 ELMSAN1Q6PJG2 1045 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 RAPH1Q70E73 1250 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 PTAR1Q7Z6K3 402 aaPredicted RBP14.32□□□□□ -0.12
C9orf3-202ENST00000297979 GALNT7Q86SF2 657 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 SLC41A1Q8IVJ1 513 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 FBXO6Q9NRD1 293 aaPredicted RBP14.32□□□□□ -0.12
C9orf3-202ENST00000297979 CPSF2Q9P2I0 782 aaKnown RBP14.32□□□□□ -0.12
C9orf3-202ENST00000297979 ZMYM5Q9UJ78 669 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 TLK1Q9UKI8 766 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 CCDC195A0A1B0GUA6 201 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 RPP40O75818 363 aaKnown RBP14.32□□□□□ -0.12
C9orf3-202ENST00000297979 HAUS5O94927 633 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 PRAMEF12O95522 483 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 GSRP00390 522 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 PDHA1P08559 390 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 TROVE2P10155 538 aaKnown RBP eCLIP14.32□□□□□ -0.123e-7■■□□□ 13.3
C9orf3-202ENST00000297979 LEPRP48357 1165 aaKnown RBP14.32□□□□□ -0.12
C9orf3-202ENST00000297979 IRF9Q00978 393 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 TSNAXIP1Q2TAA8 658 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 TBC1D25Q3MII6 688 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 FASTKD1Q53R41 847 aaKnown RBP14.32□□□□□ -0.12
C9orf3-202ENST00000297979 ATXN7L2Q5T6C5 722 aaPredicted RBP14.32□□□□□ -0.12
C9orf3-202ENST00000297979 CILP2Q8IUL8 1156 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 MFSD6LQ8IWD5 586 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 PLD6Q8N2A8 252 aaKnown RBP14.32□□□□□ -0.12
C9orf3-202ENST00000297979 CCT6BQ92526 530 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 SPO11Q9Y5K1 396 aa14.32□□□□□ -0.12
C9orf3-202ENST00000297979 K7ERQ8 282 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 ZNF197O14709 1029 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 BUD23O43709 281 aaKnown RBP14.31□□□□□ -0.12
C9orf3-202ENST00000297979 PEX19P40855 299 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 PLK1P53350 603 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 AP1S1P61966 158 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 SLC12A1Q13621 1099 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 AP1ARQ63HQ0 302 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 TRPM8Q7Z2W7 1104 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 GLT6D1Q7Z4J2 308 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 RBM23Q86U06 439 aaKnown RBP14.31□□□□□ -0.12
C9orf3-202ENST00000297979 METTL3Q86U44 580 aaKnown RBP14.31□□□□□ -0.12
C9orf3-202ENST00000297979 OR13C4Q8NGS5 318 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 ZNF707Q96C28 371 aaPredicted RBP14.31□□□□□ -0.12
C9orf3-202ENST00000297979 ELMO2Q96JJ3 720 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 TBATAQ96M53 351 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 ZNF358Q9NW07 568 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 ANKRD65E5RJM6 399 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 AURKAO14965 403 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 PHGDHO43175 533 aaKnown RBP14.31□□□□□ -0.12
C9orf3-202ENST00000297979 STMN1P16949 149 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 CLCN5P51795 746 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 ZNF140P52738 457 aaPredicted RBP14.31□□□□□ -0.12
C9orf3-202ENST00000297979 RAB10P61026 200 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 BST1Q10588 318 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 USP4Q13107 963 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 SHHQ15465 462 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 TAF1AQ15573 450 aaPredicted RBP14.31□□□□□ -0.12
C9orf3-202ENST00000297979 ZNF77Q15935 545 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 CNSTQ6PJW8 725 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 LCA5Q86VQ0 697 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 PDCD6IPQ8WUM4 868 aaKnown RBP14.31□□□□□ -0.12
C9orf3-202ENST00000297979 TM6SF2Q9BZW4 377 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 ABCB8Q9NUT2 735 aa14.31□□□□□ -0.12
C9orf3-202ENST00000297979 INTS6Q9UL03 887 aaKnown RBP14.31□□□□□ -0.12
C9orf3-202ENST00000297979 OR51F1A6NGY5 319 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 ANKRD66B4E2M5 251 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 GOT2P00505 430 aaKnown RBP14.3□□□□□ -0.12
C9orf3-202ENST00000297979 PENKP01210 267 aaPredicted RBP14.3□□□□□ -0.12
C9orf3-202ENST00000297979 SLC35E2BP0CK96 405 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 ALDH3A1P30838 453 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 TRPC1P48995 793 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 IRX1P78414 480 aaPredicted RBP14.3□□□□□ -0.12
C9orf3-202ENST00000297979 POU4F1Q01851 419 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 PTPRCAPQ14761 206 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 PCLAFQ15004 111 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 PITRM1Q5JRX3 1037 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 ADGRD2Q7Z7M1 963 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 TMEM25Q86YD3 366 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 LMLNQ96KR4 655 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 TSNARE1Q96NA8 513 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 NPHS2Q9NP85 383 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 NLE1Q9NVX2 485 aaPredicted RBP14.3□□□□□ -0.12
C9orf3-202ENST00000297979 TBC1D14Q9P2M4 693 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 COPG2Q9UBF2 871 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 CXorf51AA0A1B0GTR3 108 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 SMAD6O43541 496 aaKnown RBP14.3□□□□□ -0.12
C9orf3-202ENST00000297979 GLP2RO95838 553 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 CEBPBP17676 345 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 CRABP2P29373 138 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 OVGP1Q12889 678 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 ZNF789Q5FWF6 425 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 MDGA1Q8NFP4 955 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 PPP1R14CQ8TAE6 165 aa14.3□□□□□ -0.12
C9orf3-202ENST00000297979 C10orf82Q8WW14 230 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms