RNA–Protein interactions for RNA: ENST00000565803.1

CHD9-216, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 5

Gene CHD9, Length 3,625 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-216	ENST00000565803	PEX14	O75381	377 aa		4.14	□□□□□ -1.75
CHD9-216	ENST00000565803	BRD1	O95696	1058 aa		4.14	□□□□□ -1.75
CHD9-216	ENST00000565803	A2M	P01023	1474 aa		4.13	□□□□□ -1.75
CHD9-216	ENST00000565803	YTHDC1	Q96MU7	727 aa	Known RBP	4.13	□□□□□ -1.75
CHD9-216	ENST00000565803	COLQ	Q9Y215	455 aa	Predicted RBP	4.13	□□□□□ -1.75
CHD9-216	ENST00000565803	NRAP	Q86VF7	1730 aa		4.13	□□□□□ -1.75
CHD9-216	ENST00000565803	TESPA1	A2RU30	521 aa	Predicted RBP	4.13	□□□□□ -1.75
CHD9-216	ENST00000565803	CARNS1	A5YM72	827 aa		4.13	□□□□□ -1.75
CHD9-216	ENST00000565803	PATL2	C9JE40	543 aa	Known RBP	4.13	□□□□□ -1.75
CHD9-216	ENST00000565803	RTL5	Q5HYW3	569 aa	Predicted RBP	4.13	□□□□□ -1.75
CHD9-216	ENST00000565803	ANO8	Q9HCE9	1232 aa	Predicted RBP	4.13	□□□□□ -1.75
CHD9-216	ENST00000565803	PARD3	Q8TEW0	1356 aa		4.13	□□□□□ -1.75
CHD9-216	ENST00000565803	MAP3K5	Q99683	1374 aa		4.13	□□□□□ -1.75
CHD9-216	ENST00000565803	LMTK2	Q8IWU2	1503 aa		4.13	□□□□□ -1.75
CHD9-216	ENST00000565803	GLI3	P10071	1580 aa		4.13	□□□□□ -1.75
CHD9-216	ENST00000565803	HSP90AB4P	Q58FF6	505 aa		4.13	□□□□□ -1.75
CHD9-216	ENST00000565803	TMX4	Q9H1E5	349 aa	Predicted RBP	4.13	□□□□□ -1.75
CHD9-216	ENST00000565803	TNR	Q92752	1358 aa		4.12	□□□□□ -1.75
CHD9-216	ENST00000565803	PTMA	P06454	111 aa	Known RBP	4.12	□□□□□ -1.75
CHD9-216	ENST00000565803	ERVK-7	P63135	1459 aa		4.12	□□□□□ -1.75
CHD9-216	ENST00000565803	PDE4D	Q08499	809 aa		4.12	□□□□□ -1.75
CHD9-216	ENST00000565803	RBM33	Q96EV2	1170 aa	Known RBP	4.12	□□□□□ -1.75
CHD9-216	ENST00000565803	ASXL1	Q8IXJ9	1541 aa		4.12	□□□□□ -1.75
CHD9-216	ENST00000565803	MIA2	Q96PC5	1412 aa		4.12	□□□□□ -1.75
CHD9-216	ENST00000565803	ABCA3	Q99758	1704 aa		4.12	□□□□□ -1.75
CHD9-216	ENST00000565803	LOC102724159	A0A0B4J2E5	919 aa		4.11	□□□□□ -1.75
CHD9-216	ENST00000565803	RXRB	P28702	533 aa		4.11	□□□□□ -1.75
CHD9-216	ENST00000565803	PWP2	Q15269	919 aa	Known RBP	4.11	□□□□□ -1.75
CHD9-216	ENST00000565803	SMYD5	Q6GMV2	418 aa		4.11	□□□□□ -1.75
CHD9-216	ENST00000565803	IVNS1ABP	Q9Y6Y0	642 aa		4.11	□□□□□ -1.75
CHD9-216	ENST00000565803	NALCN	Q8IZF0	1738 aa		4.11	□□□□□ -1.75
CHD9-216	ENST00000565803	RBM26	Q5T8P6	1007 aa	Known RBP	4.11	□□□□□ -1.75
CHD9-216	ENST00000565803	PROSER2	Q86WR7	435 aa	Predicted RBP	4.11	□□□□□ -1.75
CHD9-216	ENST00000565803	GPR37	O15354	613 aa		4.1	□□□□□ -1.75
CHD9-216	ENST00000565803	ZMYND10	O75800	440 aa		4.1	□□□□□ -1.75
CHD9-216	ENST00000565803	RBM6	P78332	1123 aa	Known RBP	4.1	□□□□□ -1.75
CHD9-216	ENST00000565803	AAMP	Q13685	434 aa		4.1	□□□□□ -1.75
CHD9-216	ENST00000565803	DPY19L2	Q6NUT2	758 aa		4.1	□□□□□ -1.75
CHD9-216	ENST00000565803	EXOC8	Q8IYI6	725 aa		4.1	□□□□□ -1.75
CHD9-216	ENST00000565803	TRO	Q12816	1431 aa	Predicted RBP	4.1	□□□□□ -1.75
CHD9-216	ENST00000565803	FMN1	Q68DA7	1419 aa		4.1	□□□□□ -1.75
CHD9-216	ENST00000565803	IQGAP3	Q86VI3	1631 aa		4.1	□□□□□ -1.75
CHD9-216	ENST00000565803	ARHGEF5	Q12774	1597 aa		4.1	□□□□□ -1.75
CHD9-216	ENST00000565803	PIK3R4	Q99570	1358 aa		4.1	□□□□□ -1.75
CHD9-216	ENST00000565803	HAX1	O00165	279 aa		4.1	□□□□□ -1.75
CHD9-216	ENST00000565803	CIC	Q96RK0	1608 aa	Predicted RBP	4.1	□□□□□ -1.75
CHD9-216	ENST00000565803	PIK3C2B	O00750	1634 aa		4.1	□□□□□ -1.75
CHD9-216	ENST00000565803	TPD52L2	O43399	206 aa	Known RBP	4.1	□□□□□ -1.75
CHD9-216	ENST00000565803	CEBPA	P49715	358 aa	Predicted RBP	4.1	□□□□□ -1.75
CHD9-216	ENST00000565803	OXER1	Q8TDS5	423 aa		4.1	□□□□□ -1.75
CHD9-216	ENST00000565803	MICAL1	Q8TDZ2	1067 aa		4.1	□□□□□ -1.75
CHD9-216	ENST00000565803	CEP152	O94986	1710 aa		4.09	□□□□□ -1.75
CHD9-216	ENST00000565803	PTCD2	Q8WV60	388 aa	Known RBP	4.09	□□□□□ -1.75
CHD9-216	ENST00000565803	ZNF330	Q9Y3S2	320 aa	Predicted RBP	4.09	□□□□□ -1.75
CHD9-216	ENST00000565803	AATK	Q6ZMQ8	1374 aa		4.09	□□□□□ -1.75
CHD9-216	ENST00000565803	MYOM2	P54296	1465 aa		4.09	□□□□□ -1.75
CHD9-216	ENST00000565803	RPRD2	Q5VT52	1461 aa	Known RBP	4.09	□□□□□ -1.75
CHD9-216	ENST00000565803	POTEB2	H3BUK9	544 aa		4.09	□□□□□ -1.75
CHD9-216	ENST00000565803	PDE4A	P27815	886 aa		4.09	□□□□□ -1.75
CHD9-216	ENST00000565803	PDIA6	Q15084	440 aa		4.09	□□□□□ -1.75
CHD9-216	ENST00000565803	SPATA32	Q96LK8	384 aa		4.09	□□□□□ -1.75
CHD9-216	ENST00000565803	BOLA1	Q9Y3E2	137 aa		4.09	□□□□□ -1.75
CHD9-216	ENST00000565803	KAT6B	Q8WYB5	2073 aa		4.09	□□□□□ -1.75
CHD9-216	ENST00000565803	ARHGAP5	Q13017	1502 aa		4.09	□□□□□ -1.76
CHD9-216	ENST00000565803	TTLL12	Q14166	644 aa	Predicted RBP	4.09	□□□□□ -1.76
CHD9-216	ENST00000565803	BARGIN	Q6ZT62	677 aa		4.09	□□□□□ -1.76
CHD9-216	ENST00000565803	GPIHBP1	Q8IV16	184 aa		4.09	□□□□□ -1.76
CHD9-216	ENST00000565803	POM121	Q96HA1	1249 aa		4.09	□□□□□ -1.76
CHD9-216	ENST00000565803	CALR3	Q96L12	384 aa	Known RBP	4.09	□□□□□ -1.76
CHD9-216	ENST00000565803	DRC1	Q96MC2	740 aa		4.09	□□□□□ -1.76
CHD9-216	ENST00000565803	ABCC5	O15440	1437 aa		4.08	□□□□□ -1.76
CHD9-216	ENST00000565803	EHBP1L1	Q8N3D4	1523 aa		4.08	□□□□□ -1.76
CHD9-216	ENST00000565803	NEFM	P07197	916 aa		4.08	□□□□□ -1.76
CHD9-216	ENST00000565803	CANX	P27824	592 aa	Known RBP	4.08	□□□□□ -1.76
CHD9-216	ENST00000565803	EMILIN3	Q9NT22	766 aa		4.08	□□□□□ -1.76
CHD9-216	ENST00000565803	RIPOR2	Q9Y4F9	1068 aa		4.08	□□□□□ -1.76
CHD9-216	ENST00000565803	PLCH1	Q4KWH8	1693 aa		4.08	□□□□□ -1.76
CHD9-216	ENST00000565803	RBM10	P98175	930 aa	Known RBP	4.08	□□□□□ -1.76
CHD9-216	ENST00000565803	MRRF	Q96E11	262 aa	Known RBP	4.08	□□□□□ -1.76
CHD9-216	ENST00000565803	PLEKHD1	A6NEE1	506 aa		4.08	□□□□□ -1.76
CHD9-216	ENST00000565803		A6NJR5	290 aa		4.08	□□□□□ -1.76
CHD9-216	ENST00000565803	CSB-PGBD3	P0DP91	1061 aa		4.08	□□□□□ -1.76
CHD9-216	ENST00000565803	PRELP	P51888	382 aa		4.08	□□□□□ -1.76
CHD9-216	ENST00000565803	C1QTNF8	P60827	252 aa		4.08	□□□□□ -1.76
CHD9-216	ENST00000565803	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	4.08	□□□□□ -1.76	3e-7	■■■■□ 26.2
CHD9-216	ENST00000565803	PPME1	Q9Y570	386 aa		4.08	□□□□□ -1.76
CHD9-216	ENST00000565803	CAMTA1	Q9Y6Y1	1673 aa		4.07	□□□□□ -1.76
CHD9-216	ENST00000565803	ANKLE2	Q86XL3	938 aa		4.07	□□□□□ -1.76
CHD9-216	ENST00000565803	DNAJC2	Q99543	621 aa	Known RBP	4.07	□□□□□ -1.76
CHD9-216	ENST00000565803	DLC1	Q96QB1	1528 aa		4.07	□□□□□ -1.76
CHD9-216	ENST00000565803	CRYBG1	Q9Y4K1	1723 aa		4.07	□□□□□ -1.76
CHD9-216	ENST00000565803	UNCX	A6NJT0	531 aa		4.07	□□□□□ -1.76
CHD9-216	ENST00000565803	L3MBTL3	Q96JM7	780 aa	Predicted RBP	4.07	□□□□□ -1.76
CHD9-216	ENST00000565803	WDR90	Q96KV7	1748 aa		4.07	□□□□□ -1.76
CHD9-216	ENST00000565803	SH3BP5	O60239	455 aa		4.07	□□□□□ -1.76
CHD9-216	ENST00000565803	EFCAB2	Q5VUJ9	269 aa		4.07	□□□□□ -1.76
CHD9-216	ENST00000565803	DDRGK1	Q96HY6	314 aa		4.07	□□□□□ -1.76
CHD9-216	ENST00000565803	PCMTD1	Q96MG8	357 aa	Predicted RBP	4.07	□□□□□ -1.76
CHD9-216	ENST00000565803	HIRIP3	Q9BW71	556 aa	Predicted RBP	4.07	□□□□□ -1.76
CHD9-216	ENST00000565803	SLIT2	O94813	1529 aa		4.06	□□□□□ -1.76

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