RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 LMOD3Q0VAK6 560 aa17.5■□□□□ 0.39
LIMS1-205ENST00000410093 C20orf194Q5TEA3 1177 aa17.5■□□□□ 0.39
LIMS1-205ENST00000410093 BRINP3Q76B58 766 aa17.5■□□□□ 0.39
LIMS1-205ENST00000410093 RSPH6AQ9H0K4 717 aa17.49■□□□□ 0.39
LIMS1-205ENST00000410093 JCADQ9P266 1359 aa17.49■□□□□ 0.39
LIMS1-205ENST00000410093 OVOS2A0A0J9YW53 1432 aa17.48■□□□□ 0.39
LIMS1-205ENST00000410093 BCAR3O75815 825 aa17.48■□□□□ 0.39
LIMS1-205ENST00000410093 RIPK4P57078 832 aa17.48■□□□□ 0.39
LIMS1-205ENST00000410093 OVOS2Q6IE36 1432 aa17.48■□□□□ 0.39
LIMS1-205ENST00000410093 TTC21BQ7Z4L5 1316 aa17.48■□□□□ 0.39
LIMS1-205ENST00000410093 NME9Q86XW9 330 aa17.48■□□□□ 0.39
LIMS1-205ENST00000410093 TRIM35Q9UPQ4 493 aa17.48■□□□□ 0.39
LIMS1-205ENST00000410093 SSH2Q76I76 1423 aa17.47■□□□□ 0.39
LIMS1-205ENST00000410093 USP31Q70CQ4 1352 aa17.47■□□□□ 0.39
LIMS1-205ENST00000410093 ACEP12821 1306 aa17.47■□□□□ 0.39
LIMS1-205ENST00000410093 IL13P35225 146 aa17.47■□□□□ 0.39
LIMS1-205ENST00000410093 USP54Q70EL1 1684 aa17.46■□□□□ 0.39
LIMS1-205ENST00000410093 MST1RQ04912 1400 aa17.46■□□□□ 0.39
LIMS1-205ENST00000410093 NFE2L2Q16236 605 aa17.46■□□□□ 0.39
LIMS1-205ENST00000410093 FMN2Q9NZ56 1722 aa17.45■□□□□ 0.38
LIMS1-205ENST00000410093 SOCS7O14512 581 aa17.44■□□□□ 0.38
LIMS1-205ENST00000410093 KIF24Q5T7B8 1368 aa17.44■□□□□ 0.38
LIMS1-205ENST00000410093 PRKAR2BP31323 418 aa17.43■□□□□ 0.38
LIMS1-205ENST00000410093 ALDH1L2Q3SY69 923 aa17.43■□□□□ 0.38
LIMS1-205ENST00000410093 MEX3CQ5U5Q3 659 aaKnown RBP17.43■□□□□ 0.38
LIMS1-205ENST00000410093 PMFBP1Q8TBY8 1022 aa17.43■□□□□ 0.38
LIMS1-205ENST00000410093 CLUAP1Q96AJ1 413 aa17.43■□□□□ 0.38
LIMS1-205ENST00000410093 SPATA31A6Q5VVP1 1343 aa17.43■□□□□ 0.38
LIMS1-205ENST00000410093 PPM1GO15355 546 aaPredicted RBP17.42■□□□□ 0.38
LIMS1-205ENST00000410093 ANP32AP39687 249 aaKnown RBP17.42■□□□□ 0.38
LIMS1-205ENST00000410093 ZKSCAN2Q63HK3 967 aa17.42■□□□□ 0.38
LIMS1-205ENST00000410093 LRRC59Q96AG4 307 aaKnown RBP17.42■□□□□ 0.38
LIMS1-205ENST00000410093 AHDC1Q5TGY3 1603 aaPredicted RBP17.42■□□□□ 0.38
LIMS1-205ENST00000410093 BRPF1P55201 1214 aaPredicted RBP17.42■□□□□ 0.38
LIMS1-205ENST00000410093 EMILIN1Q9Y6C2 1016 aa17.42■□□□□ 0.38
LIMS1-205ENST00000410093 C1orf167Q5SNV9 1468 aa17.41■□□□□ 0.38
LIMS1-205ENST00000410093 KIF16BQ96L93 1317 aa17.41■□□□□ 0.38
LIMS1-205ENST00000410093 IPO8O15397 1037 aaKnown RBP17.41■□□□□ 0.38
LIMS1-205ENST00000410093 GNAI1P63096 354 aa17.41■□□□□ 0.38
LIMS1-205ENST00000410093 COL16A1Q07092 1604 aaPredicted RBP17.4■□□□□ 0.38
LIMS1-205ENST00000410093 HAP1P54257 671 aaPredicted RBP17.4■□□□□ 0.38
LIMS1-205ENST00000410093 IFT57Q9NWB7 429 aa17.4■□□□□ 0.38
LIMS1-205ENST00000410093 RGPD1P0DJD0 1748 aa17.4■□□□□ 0.38
LIMS1-205ENST00000410093 DLG5Q8TDM6 1919 aa17.39■□□□□ 0.37
LIMS1-205ENST00000410093 RGPD8O14715 1765 aaPredicted RBP17.39■□□□□ 0.37
LIMS1-205ENST00000410093 ESCO1Q5FWF5 840 aa17.39■□□□□ 0.37
LIMS1-205ENST00000410093 BACH2Q9BYV9 841 aa17.39■□□□□ 0.37
LIMS1-205ENST00000410093 CHMP4BQ9H444 224 aaKnown RBP17.39■□□□□ 0.37
LIMS1-205ENST00000410093 PDE4AP27815 886 aa17.38■□□□□ 0.37
LIMS1-205ENST00000410093 EXOSC9Q06265 439 aaKnown RBP17.38■□□□□ 0.37
LIMS1-205ENST00000410093 FRAT1Q92837 279 aaPredicted RBP17.38■□□□□ 0.37
LIMS1-205ENST00000410093 ORAI2Q96SN7 254 aa17.38■□□□□ 0.37
LIMS1-205ENST00000410093 NUTM2BA6NNL0 878 aaPredicted RBP17.37■□□□□ 0.37
LIMS1-205ENST00000410093 NUTM2EB1AL46 878 aaPredicted RBP17.37■□□□□ 0.37
LIMS1-205ENST00000410093 NUTM2AQ8IVF1 878 aaPredicted RBP17.37■□□□□ 0.37
LIMS1-205ENST00000410093 NGDNQ8NEJ9 315 aaKnown RBP17.37■□□□□ 0.37
LIMS1-205ENST00000410093 DDX17Q92841 729 aaKnown RBP17.37■□□□□ 0.37
LIMS1-205ENST00000410093 SBNO1A3KN83 1393 aa17.36■□□□□ 0.37
LIMS1-205ENST00000410093 ARHGEF10O15013 1369 aa17.36■□□□□ 0.37
LIMS1-205ENST00000410093 NUTM2FA1L443 756 aa17.36■□□□□ 0.37
LIMS1-205ENST00000410093 MVPQ14764 893 aaKnown RBP17.36■□□□□ 0.37
LIMS1-205ENST00000410093 FTSJ3Q8IY81 847 aaKnown RBP17.36■□□□□ 0.37
LIMS1-205ENST00000410093 DZIP1LQ8IYY4 767 aaKnown RBP17.36■□□□□ 0.37
LIMS1-205ENST00000410093 ANP32EQ9BTT0 268 aa17.36■□□□□ 0.37
LIMS1-205ENST00000410093 SMC4Q9NTJ3 1288 aa17.36■□□□□ 0.37
LIMS1-205ENST00000410093 ZRANB1Q9UGI0 708 aa17.35■□□□□ 0.37
LIMS1-205ENST00000410093 COG6Q9Y2V7 657 aa17.35■□□□□ 0.37
LIMS1-205ENST00000410093 FLT4P35916 1363 aa17.34■□□□□ 0.37
LIMS1-205ENST00000410093 PIK3C2AO00443 1686 aa17.34■□□□□ 0.37
LIMS1-205ENST00000410093 ZNF853P0CG23 659 aa17.34■□□□□ 0.37
LIMS1-205ENST00000410093 RRS1Q15050 365 aaKnown RBP17.34■□□□□ 0.37
LIMS1-205ENST00000410093 PANK1Q8TE04 598 aa17.34■□□□□ 0.37
LIMS1-205ENST00000410093 ARHGAP45Q92619 1136 aa17.34■□□□□ 0.37
LIMS1-205ENST00000410093 TSR2Q969E8 191 aaKnown RBP17.34■□□□□ 0.37
LIMS1-205ENST00000410093 RWDD1Q9H446 243 aaPredicted RBP17.34■□□□□ 0.37
LIMS1-205ENST00000410093 DDX19BQ9UMR2 479 aa17.34■□□□□ 0.37
LIMS1-205ENST00000410093 NPHP3Q7Z494 1330 aa17.34■□□□□ 0.37
LIMS1-205ENST00000410093 PEAK1Q9H792 1746 aa17.33■□□□□ 0.37
LIMS1-205ENST00000410093 HMOX1P09601 288 aa17.33■□□□□ 0.37
LIMS1-205ENST00000410093 ATF7IPQ6VMQ6 1270 aa17.33■□□□□ 0.37
LIMS1-205ENST00000410093 ERICH6Q7L0X2 663 aa17.33■□□□□ 0.37
LIMS1-205ENST00000410093 CFAP44Q96MT7 982 aa17.33■□□□□ 0.37
LIMS1-205ENST00000410093 RGS17Q9UGC6 210 aaPredicted RBP17.33■□□□□ 0.37
LIMS1-205ENST00000410093 NHSL1Q5SYE7 1610 aa17.33■□□□□ 0.37
LIMS1-205ENST00000410093 EIF4A2Q14240 407 aaKnown RBP17.32■□□□□ 0.36
LIMS1-205ENST00000410093 PHACTR3Q96KR7 559 aa17.32■□□□□ 0.36
LIMS1-205ENST00000410093 SSH1Q8WYL5 1049 aa17.31■□□□□ 0.36
LIMS1-205ENST00000410093 IPO9Q96P70 1041 aaKnown RBP17.31■□□□□ 0.36
LIMS1-205ENST00000410093 VIRMAQ69YN4 1812 aaKnown RBP17.31■□□□□ 0.36
LIMS1-205ENST00000410093 FOXO3O43524 673 aa17.31■□□□□ 0.36
LIMS1-205ENST00000410093 FBLN1P23142 703 aa17.31■□□□□ 0.36
LIMS1-205ENST00000410093 FAM161AQ3B820 660 aa17.31■□□□□ 0.36
LIMS1-205ENST00000410093 ZNF772Q68DY9 489 aaPredicted RBP17.31■□□□□ 0.36
LIMS1-205ENST00000410093 SOS2Q07890 1332 aaPredicted RBP17.31■□□□□ 0.36
LIMS1-205ENST00000410093 RTL1A6NKG5 1358 aa17.29■□□□□ 0.36
LIMS1-205ENST00000410093 KDRP35968 1356 aa17.29■□□□□ 0.36
LIMS1-205ENST00000410093 POTEAQ6S8J7 498 aa17.28■□□□□ 0.36
LIMS1-205ENST00000410093 MARF1Q9Y4F3 1742 aaKnown RBP17.28■□□□□ 0.36
LIMS1-205ENST00000410093 RLBP1P12271 317 aa17.27■□□□□ 0.36
LIMS1-205ENST00000410093 TRIM27P14373 513 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 101.1 ms