RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 CT47B1P0C2W7 299 aaPredicted RBP27.83■■■□□ 2.05
TRIM54-202ENST00000380075 MAPK8IP3Q9UPT6 1336 aa27.83■■■□□ 2.05
TRIM54-202ENST00000380075 ERICH6Q7L0X2 663 aa27.82■■■□□ 2.04
TRIM54-202ENST00000380075 AAMPQ13685 434 aa27.82■■■□□ 2.04
TRIM54-202ENST00000380075 ZNF692Q9BU19 519 aaPredicted RBP27.82■■■□□ 2.04
TRIM54-202ENST00000380075 RARSP54136 660 aaKnown RBP27.81■■■□□ 2.04
TRIM54-202ENST00000380075 ILDR1Q86SU0 546 aaPredicted RBP27.81■■■□□ 2.04
TRIM54-202ENST00000380075 PHLPP1O60346 1717 aa27.81■■■□□ 2.04
TRIM54-202ENST00000380075 IL16Q14005 1332 aa27.79■■■□□ 2.04
TRIM54-202ENST00000380075 PDE4AP27815 886 aa27.79■■■□□ 2.04
TRIM54-202ENST00000380075 CANXP27824 592 aaKnown RBP27.79■■■□□ 2.04
TRIM54-202ENST00000380075 BACH2Q9BYV9 841 aa27.79■■■□□ 2.04
TRIM54-202ENST00000380075 USP6P35125 1406 aa27.79■■■□□ 2.04
TRIM54-202ENST00000380075 PAK3O75914 559 aaPredicted RBP27.79■■■□□ 2.04
TRIM54-202ENST00000380075 TMPOP42166 694 aaKnown RBP27.79■■■□□ 2.04
TRIM54-202ENST00000380075 LRRC59Q96AG4 307 aaKnown RBP27.79■■■□□ 2.04
TRIM54-202ENST00000380075 COL16A1Q07092 1604 aaPredicted RBP27.78■■■□□ 2.04
TRIM54-202ENST00000380075 MON2Q7Z3U7 1717 aa27.76■■■□□ 2.03
TRIM54-202ENST00000380075 FCHSD2O94868 740 aa27.76■■■□□ 2.03
TRIM54-202ENST00000380075 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.76■■■□□ 2.03
TRIM54-202ENST00000380075 AATKQ6ZMQ8 1374 aa27.76■■■□□ 2.03
TRIM54-202ENST00000380075 SPATA31A3Q5VYP0 1347 aa27.75■■■□□ 2.03
TRIM54-202ENST00000380075 POLKQ9UBT6 870 aa27.75■■■□□ 2.03
TRIM54-202ENST00000380075 SBNO1A3KN83 1393 aa27.75■■■□□ 2.03
TRIM54-202ENST00000380075 LMOD2Q6P5Q4 547 aa27.74■■■□□ 2.03
TRIM54-202ENST00000380075 SSH2Q76I76 1423 aa27.74■■■□□ 2.03
TRIM54-202ENST00000380075 AKAP12Q02952 1782 aa27.72■■■□□ 2.03
TRIM54-202ENST00000380075 IPO9Q96P70 1041 aaKnown RBP27.72■■■□□ 2.03
TRIM54-202ENST00000380075 TTC21BQ7Z4L5 1316 aa27.72■■■□□ 2.03
TRIM54-202ENST00000380075 CDK12Q9NYV4 1490 aaPredicted RBP27.72■■■□□ 2.03
TRIM54-202ENST00000380075 TRIM35Q9UPQ4 493 aa27.71■■■□□ 2.03
TRIM54-202ENST00000380075 TNS3Q68CZ2 1445 aa27.71■■■□□ 2.03
TRIM54-202ENST00000380075 TRPM3Q9HCF6 1732 aaPredicted RBP27.7■■■□□ 2.03
TRIM54-202ENST00000380075 CLUAP1Q96AJ1 413 aa27.69■■■□□ 2.02
TRIM54-202ENST00000380075 NEFMP07197 916 aa27.69■■■□□ 2.02
TRIM54-202ENST00000380075 NUTM2GQ5VZR2 741 aa27.69■■■□□ 2.02
TRIM54-202ENST00000380075 ABTB2Q8N961 1025 aa27.69■■■□□ 2.02
TRIM54-202ENST00000380075 NOP58Q9Y2X3 529 aaKnown RBP27.69■■■□□ 2.02
TRIM54-202ENST00000380075 PLEKHG5O94827 1062 aa27.68■■■□□ 2.02
TRIM54-202ENST00000380075 FRAT1Q92837 279 aaPredicted RBP27.67■■■□□ 2.02
TRIM54-202ENST00000380075 COG3Q96JB2 828 aa27.67■■■□□ 2.02
TRIM54-202ENST00000380075 JCADQ9P266 1359 aa27.67■■■□□ 2.02
TRIM54-202ENST00000380075 RIPK4P57078 832 aa27.66■■■□□ 2.02
TRIM54-202ENST00000380075 MAP2P11137 1827 aaKnown RBP27.66■■■□□ 2.02
TRIM54-202ENST00000380075 PANK1Q8TE04 598 aa27.66■■■□□ 2.02
TRIM54-202ENST00000380075 RSPH6AQ9H0K4 717 aa27.66■■■□□ 2.02
TRIM54-202ENST00000380075 TTC21AQ8NDW8 1320 aa27.65■■■□□ 2.02
TRIM54-202ENST00000380075 NME9Q86XW9 330 aa27.65■■■□□ 2.02
TRIM54-202ENST00000380075 COG6Q9Y2V7 657 aa27.65■■■□□ 2.02
TRIM54-202ENST00000380075 NRKQ7Z2Y5 1582 aa27.65■■■□□ 2.02
TRIM54-202ENST00000380075 ARHGEF10O15013 1369 aa27.64■■■□□ 2.02
TRIM54-202ENST00000380075 ZRANB1Q9UGI0 708 aa27.63■■■□□ 2.01
TRIM54-202ENST00000380075 CABLES1Q8TDN4 633 aa27.62■■■□□ 2.01
TRIM54-202ENST00000380075 ALS2Q96Q42 1657 aa27.62■■■□□ 2.01
TRIM54-202ENST00000380075 NLRP6P59044 892 aa27.62■■■□□ 2.01
TRIM54-202ENST00000380075 PPM1GO15355 546 aaPredicted RBP27.6■■■□□ 2.01
TRIM54-202ENST00000380075 PRKAR2BP31323 418 aa27.6■■■□□ 2.01
TRIM54-202ENST00000380075 IL13P35225 146 aa27.6■■■□□ 2.01
TRIM54-202ENST00000380075 ZKSCAN2Q63HK3 967 aa27.6■■■□□ 2.01
TRIM54-202ENST00000380075 CALD1Q05682 793 aaKnown RBP27.59■■■□□ 2.01
TRIM54-202ENST00000380075 EXOSC9Q06265 439 aaKnown RBP27.59■■■□□ 2.01
TRIM54-202ENST00000380075 TSR2Q969E8 191 aaKnown RBP27.59■■■□□ 2.01
TRIM54-202ENST00000380075 EMILIN1Q9Y6C2 1016 aa27.59■■■□□ 2.01
TRIM54-202ENST00000380075 PIK3C2AO00443 1686 aa27.57■■■□□ 2
TRIM54-202ENST00000380075 NUTM2BA6NNL0 878 aaPredicted RBP27.57■■■□□ 2
TRIM54-202ENST00000380075 NUTM2EB1AL46 878 aaPredicted RBP27.57■■■□□ 2
TRIM54-202ENST00000380075 FAM161AQ3B820 660 aa27.57■■■□□ 2
TRIM54-202ENST00000380075 NUTM2AQ8IVF1 878 aaPredicted RBP27.57■■■□□ 2
TRIM54-202ENST00000380075 ZBTB47Q9UFB7 747 aaPredicted RBP27.57■■■□□ 2
TRIM54-202ENST00000380075 NFE2L2Q16236 605 aa27.57■■■□□ 2
TRIM54-202ENST00000380075 SKAP1Q86WV1 359 aa27.56■■■□□ 2
TRIM54-202ENST00000380075 ZNF428Q96B54 188 aa27.56■■■□□ 2
TRIM54-202ENST00000380075 IGHDP01880 384 aa27.55■■■□□ 2
TRIM54-202ENST00000380075 BCL2L13Q9BXK5 485 aa27.55■■■□□ 2
TRIM54-202ENST00000380075 RLBP1P12271 317 aa27.55■■■□□ 2
TRIM54-202ENST00000380075 SMC4Q9NTJ3 1288 aa27.55■■■□□ 2
TRIM54-202ENST00000380075 SPATA31A6Q5VVP1 1343 aa27.54■■■□□ 2
TRIM54-202ENST00000380075 MVPQ14764 893 aaKnown RBP27.54■■■□□ 2
TRIM54-202ENST00000380075 USP31Q70CQ4 1352 aa27.54■■■□□ 2
TRIM54-202ENST00000380075 COL22A1Q8NFW1 1626 aaPredicted RBP27.53■■■□□ 2
TRIM54-202ENST00000380075 FBLN1P23142 703 aa27.53■■■□□ 2
TRIM54-202ENST00000380075 DZIP1LQ8IYY4 767 aaKnown RBP27.53■■■□□ 2
TRIM54-202ENST00000380075 USP19O94966 1318 aa27.53■■■□□ 2
TRIM54-202ENST00000380075 MED1Q15648 1581 aaPredicted RBP27.53■■■□□ 2
TRIM54-202ENST00000380075 FTSJ3Q8IY81 847 aaKnown RBP27.52■■■□□ 2
TRIM54-202ENST00000380075 HAP1P54257 671 aaPredicted RBP27.51■■■□□ 2
TRIM54-202ENST00000380075 LMOD3Q0VAK6 560 aa27.51■■■□□ 2
TRIM54-202ENST00000380075 ALDH1L2Q3SY69 923 aa27.51■■■□□ 2
TRIM54-202ENST00000380075 OVOS2A0A0J9YW53 1432 aa27.51■■□□□ 1.99
TRIM54-202ENST00000380075 OVOS2Q6IE36 1432 aa27.51■■□□□ 1.99
TRIM54-202ENST00000380075 KIF16BQ96L93 1317 aa27.51■■□□□ 1.99
TRIM54-202ENST00000380075 SOX12O15370 315 aa27.49■■□□□ 1.99
TRIM54-202ENST00000380075 GCP02774 474 aa27.49■■□□□ 1.99
TRIM54-202ENST00000380075 NPM2Q86SE8 214 aaKnown RBP27.49■■□□□ 1.99
TRIM54-202ENST00000380075 SSH1Q8WYL5 1049 aa27.49■■□□□ 1.99
TRIM54-202ENST00000380075 ADAMTS2O95450 1211 aa27.49■■□□□ 1.99
TRIM54-202ENST00000380075 DDRGK1Q96HY6 314 aa27.49■■□□□ 1.99
TRIM54-202ENST00000380075 HMOX1P09601 288 aa27.48■■□□□ 1.99
TRIM54-202ENST00000380075 C8orf34Q49A92 452 aa27.48■■□□□ 1.99
TRIM54-202ENST00000380075 IPO8O15397 1037 aaKnown RBP27.48■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms