RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ARFGAP3Q9NP61 516 aa4.05□□□□□ -1.76
VPS50-219ENST00000495039 LIN7CQ9NUP9 197 aaKnown RBP4.05□□□□□ -1.76
VPS50-219ENST00000495039 A0A0A0MQY5 61 aa4.04□□□□□ -1.76
VPS50-219ENST00000495039 DDTLA6NHG4 134 aaPredicted RBP4.04□□□□□ -1.76
VPS50-219ENST00000495039 DDAH2O95865 285 aa4.04□□□□□ -1.76
VPS50-219ENST00000495039 SETSIPP0DME0 302 aa4.04□□□□□ -1.76
VPS50-219ENST00000495039 KRT5P13647 590 aa4.04□□□□□ -1.76
VPS50-219ENST00000495039 FMO4P31512 558 aa4.04□□□□□ -1.76
VPS50-219ENST00000495039 CDKN1AP38936 164 aa4.04□□□□□ -1.76
VPS50-219ENST00000495039 GXYLT1Q4G148 440 aa4.04□□□□□ -1.76
VPS50-219ENST00000495039 TMEM268Q5VZI3 342 aa4.04□□□□□ -1.76
VPS50-219ENST00000495039 ZNF772Q68DY9 489 aaPredicted RBP4.04□□□□□ -1.76
VPS50-219ENST00000495039 MTFR2Q6P444 385 aa4.04□□□□□ -1.76
VPS50-219ENST00000495039 TOGARAM2Q6ZUX3 1019 aa4.04□□□□□ -1.76
VPS50-219ENST00000495039 RNF144BQ7Z419 303 aa4.04□□□□□ -1.76
VPS50-219ENST00000495039 TMC8Q8IU68 726 aa4.04□□□□□ -1.76
VPS50-219ENST00000495039 VPS52Q8N1B4 723 aa4.04□□□□□ -1.76
VPS50-219ENST00000495039 HMGB4Q8WW32 186 aa4.04□□□□□ -1.76
VPS50-219ENST00000495039 USP13Q92995 863 aaPredicted RBP4.04□□□□□ -1.76
VPS50-219ENST00000495039 SLC39A13Q96H72 371 aa4.04□□□□□ -1.76
VPS50-219ENST00000495039 OR1F2PQ96R84 312 aa4.04□□□□□ -1.76
VPS50-219ENST00000495039 EBF2Q9HAK2 575 aa4.04□□□□□ -1.76
VPS50-219ENST00000495039 PDE11AQ9HCR9 933 aa4.04□□□□□ -1.76
VPS50-219ENST00000495039 OBSCNQ5VST9 7968 aa4.03□□□□□ -1.76
VPS50-219ENST00000495039 FGF17O60258 216 aa4.03□□□□□ -1.76
VPS50-219ENST00000495039 PEX14O75381 377 aa4.03□□□□□ -1.76
VPS50-219ENST00000495039 ZNF883P0CG24 379 aa4.03□□□□□ -1.76
VPS50-219ENST00000495039 IGHV4-30-4P0DP06 118 aa4.03□□□□□ -1.76
VPS50-219ENST00000495039 ABCB4P21439 1286 aa4.03□□□□□ -1.76
VPS50-219ENST00000495039 SERPINB3P29508 390 aa4.03□□□□□ -1.76
VPS50-219ENST00000495039 CDK18Q07002 472 aa4.03□□□□□ -1.76
VPS50-219ENST00000495039 ALKBH1Q13686 389 aaKnown RBP4.03□□□□□ -1.76
VPS50-219ENST00000495039 MORC3Q14149 939 aa4.03□□□□□ -1.76
VPS50-219ENST00000495039 XRRA1Q6P2D8 792 aa4.03□□□□□ -1.76
VPS50-219ENST00000495039 KIAA1324Q6UXG2 1013 aaKnown RBP4.03□□□□□ -1.76
VPS50-219ENST00000495039 TRIM74Q86UV6 250 aa4.03□□□□□ -1.76
VPS50-219ENST00000495039 TRIM73Q86UV7 250 aa4.03□□□□□ -1.76
VPS50-219ENST00000495039 SYTL1Q8IYJ3 562 aa4.03□□□□□ -1.76
VPS50-219ENST00000495039 KIAA1191Q96A73 305 aa4.03□□□□□ -1.76
VPS50-219ENST00000495039 TEFMQ96QE5 360 aaKnown RBP4.03□□□□□ -1.76
VPS50-219ENST00000495039 RPS6KC1Q96S38 1066 aa4.03□□□□□ -1.76
VPS50-219ENST00000495039 CADM1Q9BY67 442 aaKnown RBP4.03□□□□□ -1.76
VPS50-219ENST00000495039 NPFFR1Q9GZQ6 430 aa4.03□□□□□ -1.76
VPS50-219ENST00000495039 HERC5Q9UII4 1024 aaKnown RBP4.03□□□□□ -1.76
VPS50-219ENST00000495039 DAAM1Q9Y4D1 1078 aa4.03□□□□□ -1.76
VPS50-219ENST00000495039 PCDHGB2Q9Y5G2 931 aa4.03□□□□□ -1.76
VPS50-219ENST00000495039 PCDHA10Q9Y5I2 948 aa4.03□□□□□ -1.76
VPS50-219ENST00000495039 HNRNPCL2B2RXH8 293 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 GRM8O00222 908 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 TIMM23O14925 209 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 SLC22A3O75751 556 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 PMS2P2O95744 297 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 KCNA5P22460 613 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 DPP6P42658 865 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 TECP42680 631 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 HSPA7P48741 367 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 ZNF132P52740 706 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 NLRP5P59047 1200 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 MPEG1Q2M385 716 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 TBRG1Q3YBR2 411 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 SETMARQ53H47 684 aaPredicted RBP4.02□□□□□ -1.77
VPS50-219ENST00000495039 PLA2G4FQ68DD2 849 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 C1orf228Q6PIY5 440 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 KLHL24Q6TFL4 600 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 GPT2Q8TD30 523 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 IPO4Q8TEX9 1081 aaKnown RBP4.02□□□□□ -1.77
VPS50-219ENST00000495039 DDX23Q9BUQ8 820 aaKnown RBP4.02□□□□□ -1.77
VPS50-219ENST00000495039 TP63Q9H3D4 680 aaPredicted RBP4.02□□□□□ -1.77
VPS50-219ENST00000495039 PLCB1Q9NQ66 1216 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 TMEM51Q9NW97 253 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 LZTS1Q9Y250 596 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 LRCH1Q9Y2L9 728 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 PAM16Q9Y3D7 125 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 COMMD10Q9Y6G5 202 aa4.02□□□□□ -1.77
VPS50-219ENST00000495039 IGKV3D-15A0A087WSY6 115 aa4.01□□□□□ -1.77
VPS50-219ENST00000495039 ABHD14A-ACY1A0A1B0GW23 586 aa4.01□□□□□ -1.77
VPS50-219ENST00000495039 PIP5K1BO14986 540 aa4.01□□□□□ -1.77
VPS50-219ENST00000495039 DNPH1O43598 174 aa4.01□□□□□ -1.77
VPS50-219ENST00000495039 CCNT1O60563 726 aaKnown RBP4.01□□□□□ -1.77
VPS50-219ENST00000495039 PLA2G6O60733 806 aa4.01□□□□□ -1.77
VPS50-219ENST00000495039 GAGE7O76087 117 aa4.01□□□□□ -1.77
VPS50-219ENST00000495039 GAGE12FP0CL80 117 aa4.01□□□□□ -1.77
VPS50-219ENST00000495039 GAGE12GP0CL81 117 aa4.01□□□□□ -1.77
VPS50-219ENST00000495039 GAGE12IP0CL82 117 aa4.01□□□□□ -1.77
VPS50-219ENST00000495039 PPM1AP35813 382 aa4.01□□□□□ -1.77
VPS50-219ENST00000495039 GPR12P47775 334 aa4.01□□□□□ -1.77
VPS50-219ENST00000495039 CYP4A11Q02928 519 aa4.01□□□□□ -1.77
VPS50-219ENST00000495039 GAGE1Q13065 139 aa4.01□□□□□ -1.77
VPS50-219ENST00000495039 GAGE4Q13068 117 aa4.01□□□□□ -1.77
VPS50-219ENST00000495039 AADACL2Q6P093 401 aa4.01□□□□□ -1.77
VPS50-219ENST00000495039 SPICE1Q8N0Z3 855 aa4.01□□□□□ -1.77
VPS50-219ENST00000495039 OR1N1Q8NGS0 311 aa4.01□□□□□ -1.77
VPS50-219ENST00000495039 C2CD4CQ8TF44 421 aa4.01□□□□□ -1.77
VPS50-219ENST00000495039 PRPF18Q99633 342 aaKnown RBP4.01□□□□□ -1.77
VPS50-219ENST00000495039 MSTO1Q9BUK6 570 aa4.01□□□□□ -1.77
VPS50-219ENST00000495039 ZNF334Q9HCZ1 680 aaPredicted RBP4.01□□□□□ -1.77
VPS50-219ENST00000495039 SLC22A11Q9NSA0 550 aa4.01□□□□□ -1.77
VPS50-219ENST00000495039 CDC23Q9UJX2 597 aa4.01□□□□□ -1.77
VPS50-219ENST00000495039 A0A096LPK6 155 aa4□□□□□ -1.77
VPS50-219ENST00000495039 NPIPB13A6NJU9 1138 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms