RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 MCCP23508 829 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 DDX6P26196 483 aaKnown RBP eCLIP3.38□□□□□ -1.87
TRAV28-201ENST00000557548 ITPKBP27987 946 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 PSMB10P40306 273 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 RPS6KA3P51812 740 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 JAK3P52333 1124 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 EIF3BP55884 814 aaKnown RBP3.38□□□□□ -1.87
TRAV28-201ENST00000557548 SLC37A1P57057 533 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 PSMC6P62333 389 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 PSG6Q00889 435 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 IL13RA2Q14627 380 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 PUM1Q14671 1186 aaKnown RBP eCLIP3.38□□□□□ -1.87
TRAV28-201ENST00000557548 RRP1BQ14684 758 aaKnown RBP3.38□□□□□ -1.87
TRAV28-201ENST00000557548 BEAN1Q3B7T3 259 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 RABL3Q5HYI8 236 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 ZNF618Q5T7W0 954 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 ERICH6BQ5W0A0 696 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 TTI2Q6NXR4 508 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 TMEM81Q6P7N7 255 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 NCEH1Q6PIU2 408 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 CYP20A1Q6UW02 462 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 KYAT3Q6YP21 454 aaKnown RBP3.38□□□□□ -1.87
TRAV28-201ENST00000557548 Q6ZSN1 163 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 PTCHD4Q6ZW05 846 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 RRM2BQ7LG56 351 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 RNF144BQ7Z419 303 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 LIMS2Q7Z4I7 341 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 CIR1Q86X95 450 aaPredicted RBP3.38□□□□□ -1.87
TRAV28-201ENST00000557548 BRSK2Q8IWQ3 736 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 SIRT6Q8N6T7 355 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 ENDOVQ8N8Q3 282 aaKnown RBP3.38□□□□□ -1.87
TRAV28-201ENST00000557548 CPEB3Q8NE35 698 aaKnown RBP3.38□□□□□ -1.87
TRAV28-201ENST00000557548 NOC3LQ8WTT2 800 aaKnown RBP3.38□□□□□ -1.87
TRAV28-201ENST00000557548 INTS12Q96CB8 462 aaKnown RBP3.38□□□□□ -1.87
TRAV28-201ENST00000557548 PTCD3Q96EY7 689 aaKnown RBP3.38□□□□□ -1.87
TRAV28-201ENST00000557548 FAM89AQ96GI7 184 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 CNDP2Q96KP4 475 aaKnown RBP3.38□□□□□ -1.87
TRAV28-201ENST00000557548 HEMGNQ9BXL5 484 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 MAK16Q9BXY0 300 aaKnown RBP3.38□□□□□ -1.87
TRAV28-201ENST00000557548 TRIM31Q9BZY9 425 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 SIL1Q9H173 461 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 SLC32A1Q9H598 525 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 TTC12Q9H892 705 aaPredicted RBP3.38□□□□□ -1.87
TRAV28-201ENST00000557548 SNX15Q9NRS6 342 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 SLC22A11Q9NSA0 550 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 ABHD10Q9NUJ1 306 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 PEMTQ9UBM1 199 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 SLCO3A1Q9UIG8 710 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 SLC25A13Q9UJS0 675 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 ZHX1Q9UKY1 873 aaPredicted RBP3.38□□□□□ -1.87
TRAV28-201ENST00000557548 GABRQQ9UN88 632 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 ADGRA2Q96PE1 1338 aa3.38□□□□□ -1.87
TRAV28-201ENST00000557548 FAM237BA0A1B0GVD1 139 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 A0A1W2PQ09 198 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 A0A1W2PQM1 296 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 A8MV72 311 aaPredicted RBP3.37□□□□□ -1.87
TRAV28-201ENST00000557548 H7C0S8 307 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 SNAP23O00161 211 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 CEP104O60308 925 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 HNRNPCL1O60812 293 aaKnown RBP3.37□□□□□ -1.87
TRAV28-201ENST00000557548 TACC1O75410 805 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 SPDEFO95238 335 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 PDE8BO95263 885 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 HSPA4LO95757 839 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 ONECUT2O95948 504 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 C1RP00736 705 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 EIF2S1P05198 315 aaKnown RBP3.37□□□□□ -1.87
TRAV28-201ENST00000557548 SLC8A1P32418 973 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 TTKP33981 857 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 BMPR1AP36894 532 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 MTNR1AP48039 350 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 DIO1P49895 249 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 AGTR2P50052 363 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 NXPH1P58417 271 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 GPC5P78333 572 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 OLR1P78380 273 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 SHC2P98077 582 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 TOB2Q14106 344 aaPredicted RBP3.37□□□□□ -1.87
TRAV28-201ENST00000557548 SLC18A3Q16572 532 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 TMEM266Q2M3C6 531 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 BMP2KLQ5H9B9 411 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 GPR139Q6DWJ6 353 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 NAA16Q6N069 864 aaPredicted RBP3.37□□□□□ -1.87
TRAV28-201ENST00000557548 CDC73Q6P1J9 531 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 MTFR2Q6P444 385 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 TMEM88Q6PEY1 159 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 KLHL35Q6PF15 583 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 SLC39A5Q6ZMH5 540 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 FAM47EQ6ZV65 393 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 Q6ZWC4 215 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 GALNT7Q86SF2 657 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 PRPF39Q86UA1 669 aaKnown RBP3.37□□□□□ -1.87
TRAV28-201ENST00000557548 VSIG1Q86XK7 387 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 TEX11Q8IYF3 940 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 CCDC105Q8IYK2 499 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 ULK2Q8IYT8 1036 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 ADGRF3Q8IZF5 1079 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 KCTD6Q8NC69 237 aa3.37□□□□□ -1.87
TRAV28-201ENST00000557548 SRFBP1Q8NEF9 429 aaKnown RBP3.37□□□□□ -1.87
TRAV28-201ENST00000557548 CADM4Q8NFZ8 388 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms