RNA–Protein interactions for RNA: ENST00000477421.2

COL27A1-204, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 3,991 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-204ENST00000477421 ZRANB1Q9UGI0 708 aa13.65□□□□□ -0.22
COL27A1-204ENST00000477421 BRPF3Q9ULD4 1205 aa13.65□□□□□ -0.22
COL27A1-204ENST00000477421 GPRASP1Q5JY77 1395 aa13.65□□□□□ -0.22
COL27A1-204ENST00000477421 NCKAP5LQ9HCH0 1330 aa13.64□□□□□ -0.23
COL27A1-204ENST00000477421 ARHGEF12Q9NZN5 1544 aa13.63□□□□□ -0.23
COL27A1-204ENST00000477421 CFAP65Q6ZU64 1925 aaKnown RBP13.63□□□□□ -0.23
COL27A1-204ENST00000477421 XPCQ01831 940 aaPredicted RBP13.63□□□□□ -0.23
COL27A1-204ENST00000477421 NFE2L2Q16236 605 aa13.63□□□□□ -0.23
COL27A1-204ENST00000477421 DNTTIP2Q5QJE6 756 aaKnown RBP13.63□□□□□ -0.23
COL27A1-204ENST00000477421 ANO2Q9NQ90 1003 aa13.63□□□□□ -0.23
COL27A1-204ENST00000477421 ABCC10Q5T3U5 1492 aa13.62□□□□□ -0.23
COL27A1-204ENST00000477421 GCC2Q8IWJ2 1684 aa13.62□□□□□ -0.23
COL27A1-204ENST00000477421 CHMP5Q9NZZ3 219 aa13.62□□□□□ -0.23
COL27A1-204ENST00000477421 DDX49Q9Y6V7 483 aaKnown RBP13.62□□□□□ -0.23
COL27A1-204ENST00000477421 ST18O60284 1047 aa13.62□□□□□ -0.23
COL27A1-204ENST00000477421 TMEM132AQ24JP5 1023 aa13.62□□□□□ -0.23
COL27A1-204ENST00000477421 COL17A1Q9UMD9 1497 aaPredicted RBP13.61□□□□□ -0.23
COL27A1-204ENST00000477421 WDR7Q9Y4E6 1490 aa13.61□□□□□ -0.23
COL27A1-204ENST00000477421 AIMP1Q12904 312 aaKnown RBP13.61□□□□□ -0.23
COL27A1-204ENST00000477421 AAMPQ13685 434 aa13.61□□□□□ -0.23
COL27A1-204ENST00000477421 C1orf141Q5JVX7 400 aa13.61□□□□□ -0.23
COL27A1-204ENST00000477421 CFAP44Q96MT7 982 aa13.6□□□□□ -0.23
COL27A1-204ENST00000477421 ASXL1Q8IXJ9 1541 aa13.6□□□□□ -0.23
COL27A1-204ENST00000477421 ESCO1Q5FWF5 840 aa13.6□□□□□ -0.23
COL27A1-204ENST00000477421 C9orf78Q9NZ63 289 aaPredicted RBP13.6□□□□□ -0.23
COL27A1-204ENST00000477421 CHD1LQ86WJ1 897 aa13.6□□□□□ -0.23
COL27A1-204ENST00000477421 WASLO00401 505 aaPredicted RBP13.59□□□□□ -0.23
COL27A1-204ENST00000477421 ZNF692Q9BU19 519 aaPredicted RBP13.59□□□□□ -0.23
COL27A1-204ENST00000477421 ABCC2Q92887 1545 aa13.58□□□□□ -0.24
COL27A1-204ENST00000477421 GOLGA6L4A6NEF3 574 aa13.58□□□□□ -0.24
COL27A1-204ENST00000477421 F6X3S4 739 aa13.57□□□□□ -0.24
COL27A1-204ENST00000477421 RNF123Q5XPI4 1314 aa13.57□□□□□ -0.24
COL27A1-204ENST00000477421 SEC24BO95487 1268 aa13.56□□□□□ -0.24
COL27A1-204ENST00000477421 USHBP1Q8N6Y0 703 aa13.56□□□□□ -0.24
COL27A1-204ENST00000477421 CDC45O75419 566 aa13.56□□□□□ -0.24
COL27A1-204ENST00000477421 REC8O95072 547 aa13.56□□□□□ -0.24
COL27A1-204ENST00000477421 CT47B1P0C2W7 299 aaPredicted RBP13.56□□□□□ -0.24
COL27A1-204ENST00000477421 SMARCA5O60264 1052 aaPredicted RBP13.56□□□□□ -0.24
COL27A1-204ENST00000477421 PHACTR3Q96KR7 559 aa13.56□□□□□ -0.24
COL27A1-204ENST00000477421 NLRP2Q9NX02 1062 aa13.56□□□□□ -0.24
COL27A1-204ENST00000477421 DDX11L8A8MPP1 907 aa13.56□□□□□ -0.24
COL27A1-204ENST00000477421 SURF6O75683 361 aaKnown RBP13.56□□□□□ -0.24
COL27A1-204ENST00000477421 C8orf34Q49A92 452 aa13.55□□□□□ -0.24
COL27A1-204ENST00000477421 AEBP1Q8IUX7 1158 aa13.55□□□□□ -0.24
COL27A1-204ENST00000477421 UBTFL1P0CB47 393 aaPredicted RBP13.55□□□□□ -0.24
COL27A1-204ENST00000477421 HSP90AB2PQ58FF8 381 aa13.55□□□□□ -0.24
COL27A1-204ENST00000477421 INTS3Q68E01 1043 aaKnown RBP13.55□□□□□ -0.24
COL27A1-204ENST00000477421 EXOC6BQ9Y2D4 811 aa13.55□□□□□ -0.24
COL27A1-204ENST00000477421 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.55□□□□□ -0.24
COL27A1-204ENST00000477421 PLA2R1Q13018 1463 aa13.55□□□□□ -0.24
COL27A1-204ENST00000477421 KRT24Q2M2I5 525 aa13.55□□□□□ -0.24
COL27A1-204ENST00000477421 HDGFL1Q5TGJ6 251 aa13.55□□□□□ -0.24
COL27A1-204ENST00000477421 TSPYL6Q8N831 410 aa13.54□□□□□ -0.24
COL27A1-204ENST00000477421 POLKQ9UBT6 870 aa13.54□□□□□ -0.24
COL27A1-204ENST00000477421 GCC1Q96CN9 775 aa13.54□□□□□ -0.24
COL27A1-204ENST00000477421 MAGI2Q86UL8 1455 aa13.54□□□□□ -0.24
COL27A1-204ENST00000477421 MBIPQ9NS73 344 aa13.54□□□□□ -0.24
COL27A1-204ENST00000477421 MSNP26038 577 aaKnown RBP13.53□□□□□ -0.24
COL27A1-204ENST00000477421 IL1RAPL2Q9NP60 686 aa13.53□□□□□ -0.24
COL27A1-204ENST00000477421 AMOTL2Q9Y2J4 779 aa13.53□□□□□ -0.24
COL27A1-204ENST00000477421 ZNF518AQ6AHZ1 1483 aa13.53□□□□□ -0.24
COL27A1-204ENST00000477421 ANKRD36BQ8N2N9 1353 aa13.53□□□□□ -0.24
COL27A1-204ENST00000477421 GAS2L2Q8NHY3 880 aa13.53□□□□□ -0.24
COL27A1-204ENST00000477421 NINLQ9Y2I6 1382 aa13.53□□□□□ -0.24
COL27A1-204ENST00000477421 TRAK2O60296 914 aa13.53□□□□□ -0.24
COL27A1-204ENST00000477421 ABCA8O94911 1581 aa13.53□□□□□ -0.24
COL27A1-204ENST00000477421 MAP4K4O95819 1239 aaPredicted RBP13.52□□□□□ -0.24
COL27A1-204ENST00000477421 MCTP1Q6DN14 999 aa13.52□□□□□ -0.24
COL27A1-204ENST00000477421 THEMISQ8N1K5 641 aaPredicted RBP13.52□□□□□ -0.24
COL27A1-204ENST00000477421 TBC1D2Q9BYX2 928 aa13.52□□□□□ -0.24
COL27A1-204ENST00000477421 A0A1W2PP64 1363 aa13.52□□□□□ -0.24
COL27A1-204ENST00000477421 NEK4P51957 841 aa13.52□□□□□ -0.25
COL27A1-204ENST00000477421 POLR3AO14802 1390 aaPredicted RBP13.52□□□□□ -0.25
COL27A1-204ENST00000477421 ARID3AQ99856 593 aa13.52□□□□□ -0.25
COL27A1-204ENST00000477421 DIAPH3Q9NSV4 1193 aa13.52□□□□□ -0.25
COL27A1-204ENST00000477421 GORABQ5T7V8 394 aa13.51□□□□□ -0.25
COL27A1-204ENST00000477421 CCDC30Q5VVM6 783 aa13.51□□□□□ -0.25
COL27A1-204ENST00000477421 ZRSR1Q15695 479 aaKnown RBP13.51□□□□□ -0.25
COL27A1-204ENST00000477421 GPATCH3Q96I76 525 aa13.51□□□□□ -0.25
COL27A1-204ENST00000477421 SAMD9LQ8IVG5 1584 aa13.51□□□□□ -0.25
COL27A1-204ENST00000477421 C8orf58Q8NAV2 365 aa13.51□□□□□ -0.25
COL27A1-204ENST00000477421 CHMP4AQ9BY43 222 aa13.5□□□□□ -0.25
COL27A1-204ENST00000477421 PIK3C2GO75747 1445 aa13.5□□□□□ -0.25
COL27A1-204ENST00000477421 ACEP12821 1306 aa13.5□□□□□ -0.25
COL27A1-204ENST00000477421 IFIT2P09913 472 aaKnown RBP13.5□□□□□ -0.25
COL27A1-204ENST00000477421 ERCC6L2Q5T890 1561 aa13.5□□□□□ -0.25
COL27A1-204ENST00000477421 UGGT1Q9NYU2 1555 aa13.49□□□□□ -0.25
COL27A1-204ENST00000477421 GNAI2P04899 355 aa13.49□□□□□ -0.25
COL27A1-204ENST00000477421 RAPGEF4Q8WZA2 1011 aa13.49□□□□□ -0.25
COL27A1-204ENST00000477421 ZC3H6P61129 1189 aaKnown RBP13.49□□□□□ -0.25
COL27A1-204ENST00000477421 TSHZ3Q63HK5 1081 aa13.49□□□□□ -0.25
COL27A1-204ENST00000477421 IFT57Q9NWB7 429 aa13.49□□□□□ -0.25
COL27A1-204ENST00000477421 KDM5CP41229 1560 aa13.49□□□□□ -0.25
COL27A1-204ENST00000477421 GNAI3P08754 354 aa13.48□□□□□ -0.25
COL27A1-204ENST00000477421 ZNF530Q6P9A1 599 aaPredicted RBP13.48□□□□□ -0.25
COL27A1-204ENST00000477421 TTC5Q8N0Z6 440 aa13.48□□□□□ -0.25
COL27A1-204ENST00000477421 FOXO3O43524 673 aa13.48□□□□□ -0.25
COL27A1-204ENST00000477421 TAF7LQ5H9L4 462 aa13.48□□□□□ -0.25
COL27A1-204ENST00000477421 NPHP1O15259 732 aa13.48□□□□□ -0.25
COL27A1-204ENST00000477421 HSP90B1P14625 803 aaKnown RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms