RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 MFHAS1Q9Y4C4 1052 aa12.29□□□□□ -0.44
NUP54-202ENST00000502850 MYBPHLA2RUH7 354 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 USP1O94782 785 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 FYNP06241 537 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 DLDP09622 509 aaKnown RBP12.28□□□□□ -0.44
NUP54-202ENST00000502850 USP17L7P0C7H9 530 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 SRGAP2BP0DMP2 458 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 PTPN3P26045 913 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 GRK4P32298 578 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 NPY2RP49146 381 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 SCNN1GP51170 649 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 TSPY1Q01534 308 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 WASHC2DQ5SRD0 308 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 KIAA0319Q5VV43 1072 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 PM20D1Q6GTS8 502 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 GDF6Q6KF10 455 aaPredicted RBP12.28□□□□□ -0.44
NUP54-202ENST00000502850 DCLRE1AQ6PJP8 1040 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 HFE2Q6ZVN8 426 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 LINC00523Q86TU6 105 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 RFWD2Q8NHY2 731 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 PPP1R14CQ8TAE6 165 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 SREK1Q8WXA9 508 aaKnown RBP12.28□□□□□ -0.44
NUP54-202ENST00000502850 NDRG1Q92597 394 aaKnown RBP12.28□□□□□ -0.44
NUP54-202ENST00000502850 MYLPFQ96A32 169 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 CERS2Q96G23 380 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 SLC13A1Q9BZW2 595 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 OSBPL2Q9H1P3 480 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 TLE6Q9H808 572 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 THAP1Q9NVV9 213 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 HEY2Q9UBP5 337 aa12.28□□□□□ -0.44
NUP54-202ENST00000502850 ZNF638Q14966 1978 aaKnown RBP12.28□□□□□ -0.44
NUP54-202ENST00000502850 PTPRDP23468 1912 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 HHLA1C9JL84 531 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 FGF10O15520 208 aaPredicted RBP12.27□□□□□ -0.44
NUP54-202ENST00000502850 SPRP35270 261 aaPredicted RBP12.27□□□□□ -0.44
NUP54-202ENST00000502850 HADHAP40939 763 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 SERPINB8P50452 374 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 CDK7P50613 346 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 PITX1P78337 314 aaPredicted RBP12.27□□□□□ -0.44
NUP54-202ENST00000502850 PDE1BQ01064 536 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 OCRLQ01968 901 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 BST1Q10588 318 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 OVGP1Q12889 678 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 TUSC3Q13454 348 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 CHI3L2Q15782 390 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 BRMS1LQ5PSV4 323 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 PRPF38BQ5VTL8 546 aaKnown RBP12.27□□□□□ -0.44
NUP54-202ENST00000502850 ARMC3Q5W041 872 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 FAM171BQ6P995 826 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 AGMOQ6ZNB7 445 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 C4orf50Q6ZRC1 276 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 CDHR3Q6ZTQ4 885 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 LZTR1Q8N653 840 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.27□□□□□ -0.44
NUP54-202ENST00000502850 ZMIZ2Q8NF64 920 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 LRRN4Q8WUT4 740 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 ARNTL2Q8WYA1 636 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 NSL1Q96IY1 281 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 MAGEB5Q9BZ81 275 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 IL22Q9GZX6 179 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 ALG13Q9NP73 1137 aaKnown RBP12.27□□□□□ -0.44
NUP54-202ENST00000502850 XPNPEP3Q9NQH7 507 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 SYBUQ9NX95 663 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 MID2Q9UJV3 735 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 VANGL2Q9ULK5 521 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 SORCS3Q9UPU3 1222 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 SQORQ9Y6N5 450 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 RPS6KL1Q9Y6S9 549 aa12.27□□□□□ -0.44
NUP54-202ENST00000502850 CASTOR2A6NHX0 329 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 M0QZQ0 153 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 SEPT4O43236 478 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 TIMM44O43615 452 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 UGT1A9O60656 530 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 SNNO75324 88 aaPredicted RBP12.26□□□□□ -0.45
NUP54-202ENST00000502850 CHRNA1P02708 482 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 ITGA2BP08514 1039 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 CTSHP09668 335 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 TYMPP19971 482 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 GRK2P25098 689 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 GRIA1P42261 906 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 PRKCZQ05513 592 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 STX3Q13277 289 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 CTC1Q2NKJ3 1217 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 CCDC153Q494R4 210 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 TIGD5Q53EQ6 642 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 TEX44Q53QW1 395 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 PLEKHG4Q58EX7 1191 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 NAPEPLDQ6IQ20 393 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 CXCL17Q6UXB2 119 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 WDR75Q8IWA0 830 aaKnown RBP12.26□□□□□ -0.45
NUP54-202ENST00000502850 CCDC33Q8N5R6 958 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.26□□□□□ -0.45
NUP54-202ENST00000502850 ISL2Q96A47 359 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 SLC7A6OSQ96CW6 309 aaPredicted RBP12.26□□□□□ -0.45
NUP54-202ENST00000502850 MMADHCQ9H3L0 296 aaPredicted RBP12.26□□□□□ -0.45
NUP54-202ENST00000502850 UGT1A7Q9HAW7 530 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 UGT1A10Q9HAW8 530 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 UGT1A8Q9HAW9 530 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 CASS4Q9NQ75 786 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 GABRQQ9UN88 632 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms