RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 PGAP3Q96FM1 320 aaPredicted RBP16.39■□□□□ 0.21
CLN3-201ENST00000333496 LMLNQ96KR4 655 aa16.39■□□□□ 0.21
CLN3-201ENST00000333496 TBCBQ99426 244 aa16.39■□□□□ 0.21
CLN3-201ENST00000333496 ANLNQ9NQW6 1124 aa16.39■□□□□ 0.21
CLN3-201ENST00000333496 METTL5Q9NRN9 209 aaKnown RBP16.39■□□□□ 0.21
CLN3-201ENST00000333496 ELOVL2Q9NXB9 296 aa16.39■□□□□ 0.21
CLN3-201ENST00000333496 CACNA2D2Q9NY47 1150 aa16.39■□□□□ 0.21
CLN3-201ENST00000333496 STIM2Q9P246 746 aa16.39■□□□□ 0.21
CLN3-201ENST00000333496 THAP10Q9P2Z0 257 aaPredicted RBP16.39■□□□□ 0.21
CLN3-201ENST00000333496 DMXL1Q9Y485 3027 aa16.39■□□□□ 0.21
CLN3-201ENST00000333496 PTPRZ1P23471 2315 aaPredicted RBP16.39■□□□□ 0.21
CLN3-201ENST00000333496 NUP205Q92621 2012 aa16.39■□□□□ 0.21
CLN3-201ENST00000333496 I6L893 689 aaPredicted RBP16.38■□□□□ 0.21
CLN3-201ENST00000333496 SLC2A3P11169 496 aa16.38■□□□□ 0.21
CLN3-201ENST00000333496 HOXB2P14652 356 aa16.38■□□□□ 0.21
CLN3-201ENST00000333496 SULT1E1P49888 294 aa16.38■□□□□ 0.21
CLN3-201ENST00000333496 ATXN1P54253 815 aaKnown RBP16.38■□□□□ 0.21
CLN3-201ENST00000333496 SLC25A52Q3SY17 297 aa16.38■□□□□ 0.21
CLN3-201ENST00000333496 ARCQ7LC44 396 aa16.38■□□□□ 0.21
CLN3-201ENST00000333496 ADIPOR2Q86V24 386 aa16.38■□□□□ 0.21
CLN3-201ENST00000333496 PHF13Q86YI8 300 aaPredicted RBP16.38■□□□□ 0.21
CLN3-201ENST00000333496 LGI2Q8N0V4 545 aa16.38■□□□□ 0.21
CLN3-201ENST00000333496 DCLK2Q8N568 766 aa16.38■□□□□ 0.21
CLN3-201ENST00000333496 EMC1Q8N766 993 aa16.38■□□□□ 0.21
CLN3-201ENST00000333496 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.38■□□□□ 0.21
CLN3-201ENST00000333496 SORCS1Q8WY21 1168 aa16.38■□□□□ 0.21
CLN3-201ENST00000333496 CFAP57Q96MR6 1250 aa16.38■□□□□ 0.21
CLN3-201ENST00000333496 GABRG3Q99928 467 aa16.38■□□□□ 0.21
CLN3-201ENST00000333496 TPSD1Q9BZJ3 242 aa16.38■□□□□ 0.21
CLN3-201ENST00000333496 ABCB8Q9NUT2 735 aa16.38■□□□□ 0.21
CLN3-201ENST00000333496 STAP1Q9ULZ2 295 aa16.38■□□□□ 0.21
CLN3-201ENST00000333496 EP300Q09472 2414 aaPredicted RBP16.38■□□□□ 0.21
CLN3-201ENST00000333496 LAMA1P25391 3075 aa16.38■□□□□ 0.21
CLN3-201ENST00000333496 GJB6O95452 261 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 ABCB4P21439 1286 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 CD70P32970 193 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 CXCR3P49682 368 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 GSCP56915 257 aaPredicted RBP16.37■□□□□ 0.21
CLN3-201ENST00000333496 ENPP2Q13822 863 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 FIGNQ5HY92 759 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 KIAA1211LQ6NV74 962 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 PRR23BQ6ZRT6 265 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 MON1BQ7L1V2 547 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 CHSY1Q86X52 802 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 JOSD2Q8TAC2 188 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 FIBINQ8TAL6 211 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 RNF34Q969K3 372 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 POLMQ9NP87 494 aaPredicted RBP16.37■□□□□ 0.21
CLN3-201ENST00000333496 SEPT11Q9NVA2 429 aaKnown RBP16.37■□□□□ 0.21
CLN3-201ENST00000333496 AIPL1Q9NZN9 384 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 ADAM22Q9P0K1 906 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 IFNKQ9P0W0 207 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 SLC12A6Q9UHW9 1150 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 GGA2Q9UJY4 613 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 RAD54BQ9Y620 910 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 TCRBV21S2A2A0A5A6 115 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 PAGE1O75459 146 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 RPP40O75818 363 aaKnown RBP16.37■□□□□ 0.21
CLN3-201ENST00000333496 ADCY5O95622 1261 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 CCDC172P0C7W6 258 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 PABPC1P11940 636 aaKnown RBP16.37■□□□□ 0.21
CLN3-201ENST00000333496 IL12RB1P42701 662 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 NSFP46459 744 aaKnown RBP16.37■□□□□ 0.21
CLN3-201ENST00000333496 ZNF234Q14588 700 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 EIF4HQ15056 248 aaKnown RBP16.37■□□□□ 0.21
CLN3-201ENST00000333496 FSCBQ5H9T9 825 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 CHST9Q7L1S5 443 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 MFN1Q8IWA4 741 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 RUBCNQ92622 972 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 ERLEC1Q96DZ1 483 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 EDEM3Q9BZQ6 932 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 CIPCQ9C0C6 399 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 WDCPQ9H6R7 721 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 ARHGEF38Q9NXL2 777 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 INTS6Q9UL03 887 aaKnown RBP16.37■□□□□ 0.21
CLN3-201ENST00000333496 HS3ST4Q9Y661 456 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 STON1Q9Y6Q2 735 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 ZNF292O60281 2723 aa16.37■□□□□ 0.21
CLN3-201ENST00000333496 DCHS1Q96JQ0 3298 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 TCRBV5S1A1TA0A578 114 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 ESPNB1AK53 854 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 F5H5T6 163 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 DCLK1O15075 740 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 GABRG2P18507 467 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 GGCXP38435 758 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 PRKCIP41743 596 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 DEUP1Q05D60 604 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 LMAN2Q12907 356 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 RAB6CQ53S08 254 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 FBXL22Q6P050 247 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 CARNMT1Q8N4J0 409 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 WFIKKN2Q8TEU8 576 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 UCMAQ8WVF2 138 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 HMGB4Q8WW32 186 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 IGSF8Q969P0 613 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 TKTL2Q9H0I9 626 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 RAB6CQ9H0N0 254 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 HAUS4Q9H6D7 363 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 TMPRSS4Q9NRS4 437 aa16.36■□□□□ 0.21
CLN3-201ENST00000333496 TAS2R14Q9NYV8 317 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms