RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 C11orf74Q86VG3 221 aa18.63■□□□□ 0.57
UPF3A-203ENST00000474056 DEFB106AQ8N104 65 aa18.63■□□□□ 0.57
UPF3A-203ENST00000474056 SORCS1Q8WY21 1168 aa18.63■□□□□ 0.57
UPF3A-203ENST00000474056 MYEOVQ96EZ4 313 aa18.63■□□□□ 0.57
UPF3A-203ENST00000474056 SPACA7Q96KW9 195 aa18.63■□□□□ 0.57
UPF3A-203ENST00000474056 NOX5Q96PH1 765 aa18.63■□□□□ 0.57
UPF3A-203ENST00000474056 SLC2A13Q96QE2 648 aa18.63■□□□□ 0.57
UPF3A-203ENST00000474056 CIPCQ9C0C6 399 aa18.63■□□□□ 0.57
UPF3A-203ENST00000474056 SLC6A17Q9H1V8 727 aa18.63■□□□□ 0.57
UPF3A-203ENST00000474056 ELOVL2Q9NXB9 296 aa18.63■□□□□ 0.57
UPF3A-203ENST00000474056 DLL3Q9NYJ7 618 aa18.63■□□□□ 0.57
UPF3A-203ENST00000474056 CALCOCO1Q9P1Z2 691 aa18.63■□□□□ 0.57
UPF3A-203ENST00000474056 MBD1Q9UIS9 605 aaPredicted RBP18.63■□□□□ 0.57
UPF3A-203ENST00000474056 CEP83Q9Y592 693 aa18.63■□□□□ 0.57
UPF3A-203ENST00000474056 PCDHGA5Q9Y5G8 931 aa18.63■□□□□ 0.57
UPF3A-203ENST00000474056 STON1Q9Y6Q2 735 aa18.63■□□□□ 0.57
UPF3A-203ENST00000474056 FAM170AA1A519 330 aa18.62■□□□□ 0.57
UPF3A-203ENST00000474056 F8VZ95 297 aa18.62■□□□□ 0.57
UPF3A-203ENST00000474056 GDF9O60383 454 aa18.62■□□□□ 0.57
UPF3A-203ENST00000474056 GLI1P08151 1106 aa18.62■□□□□ 0.57
UPF3A-203ENST00000474056 ZNF806P0C7X5 589 aa18.62■□□□□ 0.57
UPF3A-203ENST00000474056 COPB1P53618 953 aaKnown RBP18.62■□□□□ 0.57
UPF3A-203ENST00000474056 CREB5Q02930 508 aa18.62■□□□□ 0.57
UPF3A-203ENST00000474056 EIF4EBP2Q13542 120 aaPredicted RBP18.62■□□□□ 0.57
UPF3A-203ENST00000474056 ENPP2Q13822 863 aa18.62■□□□□ 0.57
UPF3A-203ENST00000474056 PUM1Q14671 1186 aaKnown RBP eCLIP18.62■□□□□ 0.572e-10■□□□□ 9
UPF3A-203ENST00000474056 NCAPHQ15003 741 aa18.62■□□□□ 0.57
UPF3A-203ENST00000474056 SF3A2Q15428 464 aaKnown RBP18.62■□□□□ 0.57
UPF3A-203ENST00000474056 DCAF6Q58WW2 860 aa18.62■□□□□ 0.57
UPF3A-203ENST00000474056 ZC3H12AQ5D1E8 599 aaKnown RBP18.62■□□□□ 0.57
UPF3A-203ENST00000474056 PLA2G2CQ5R387 149 aa18.62■□□□□ 0.57
UPF3A-203ENST00000474056 DDX1Q92499 740 aaKnown RBP18.62■□□□□ 0.57
UPF3A-203ENST00000474056 STK33Q9BYT3 514 aa18.62■□□□□ 0.57
UPF3A-203ENST00000474056 ABCB8Q9NUT2 735 aa18.62■□□□□ 0.57
UPF3A-203ENST00000474056 ASNSD1Q9NWL6 643 aa18.62■□□□□ 0.57
UPF3A-203ENST00000474056 NUMA1Q14980 2115 aa18.61■□□□□ 0.57
UPF3A-203ENST00000474056 ADAMTS9Q9P2N4 1935 aa18.61■□□□□ 0.57
UPF3A-203ENST00000474056 SYNJ2BP-COX16A0A087WUM0 186 aa18.61■□□□□ 0.57
UPF3A-203ENST00000474056 EPHB6O15197 1021 aa18.61■□□□□ 0.57
UPF3A-203ENST00000474056 HSF2BPO75031 334 aa18.61■□□□□ 0.57
UPF3A-203ENST00000474056 APOEP02649 317 aa18.61■□□□□ 0.57
UPF3A-203ENST00000474056 TPM2P07951 284 aa18.61■□□□□ 0.57
UPF3A-203ENST00000474056 CDH5P33151 784 aaPredicted RBP18.61■□□□□ 0.57
UPF3A-203ENST00000474056 TYRO3Q06418 890 aa18.61■□□□□ 0.57
UPF3A-203ENST00000474056 EFHC1Q5JVL4 640 aa18.61■□□□□ 0.57
UPF3A-203ENST00000474056 MPP7Q5T2T1 576 aa18.61■□□□□ 0.57
UPF3A-203ENST00000474056 CHST9Q7L1S5 443 aa18.61■□□□□ 0.57
UPF3A-203ENST00000474056 NOP9Q86U38 636 aaKnown RBP18.61■□□□□ 0.57
UPF3A-203ENST00000474056 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.61■□□□□ 0.57
UPF3A-203ENST00000474056 IRX2Q9BZI1 471 aaPredicted RBP18.61■□□□□ 0.57
UPF3A-203ENST00000474056 HSD3B7Q9H2F3 369 aa18.61■□□□□ 0.57
UPF3A-203ENST00000474056 PDCL3Q9H2J4 239 aa18.61■□□□□ 0.57
UPF3A-203ENST00000474056 CD93Q9NPY3 652 aa18.61■□□□□ 0.57
UPF3A-203ENST00000474056 COX16Q9P0S2 106 aa18.61■□□□□ 0.57
UPF3A-203ENST00000474056 STIM2Q9P246 746 aa18.61■□□□□ 0.57
UPF3A-203ENST00000474056 LIMA1Q9UHB6 759 aaKnown RBP18.61■□□□□ 0.57
UPF3A-203ENST00000474056 GGA2Q9UJY4 613 aa18.61■□□□□ 0.57
UPF3A-203ENST00000474056 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.6■□□□□ 0.57
UPF3A-203ENST00000474056 BCLAF3A2AJT9 711 aaKnown RBP18.6■□□□□ 0.57
UPF3A-203ENST00000474056 NPC1O15118 1278 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 PABPC1P11940 636 aaKnown RBP18.6■□□□□ 0.57
UPF3A-203ENST00000474056 PRKCHP24723 683 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 CD70P32970 193 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 DHPSP49366 369 aaPredicted RBP18.6■□□□□ 0.57
UPF3A-203ENST00000474056 POLR2FP61218 127 aaKnown RBP18.6■□□□□ 0.57
UPF3A-203ENST00000474056 RPS24P62847 133 aaKnown RBP18.6■□□□□ 0.57
UPF3A-203ENST00000474056 CDK17Q00537 523 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 SLC6A3Q01959 620 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 STARD3Q14849 445 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 FUT11Q495W5 492 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 MS4A13Q5J8X5 152 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 FKBP15Q5T1M5 1219 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 TCEAL6Q6IPX3 200 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 SLC26A9Q7LBE3 791 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 KIAA0907Q7Z7F0 614 aaPredicted RBP18.6■□□□□ 0.57
UPF3A-203ENST00000474056 ADIPOR2Q86V24 386 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 MFN1Q8IWA4 741 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 TMEFF1Q8IYR6 380 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 HJURPQ8NCD3 748 aaPredicted RBP18.6■□□□□ 0.57
UPF3A-203ENST00000474056 TMEM35BQ8NCS4 154 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 EPS8L1Q8TE68 723 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 WFIKKN2Q8TEU8 576 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 CYB5D2Q8WUJ1 264 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 TCEAL3Q969E4 200 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 DDX50Q9BQ39 737 aaKnown RBP18.6■□□□□ 0.57
UPF3A-203ENST00000474056 SYNCQ9H7C4 482 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 FAM204AQ9H8W3 233 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 NLRC4Q9NPP4 1024 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 RXFP3Q9NSD7 469 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 FAM207AQ9NSI2 230 aaPredicted RBP18.6■□□□□ 0.57
UPF3A-203ENST00000474056 DDIT4Q9NX09 232 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 CDV3Q9UKY7 258 aaKnown RBP18.6■□□□□ 0.57
UPF3A-203ENST00000474056 SIK3Q9Y2K2 1263 aa18.6■□□□□ 0.57
UPF3A-203ENST00000474056 SPTBN2O15020 2390 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 TYW5A2RUC4 315 aaKnown RBP18.59■□□□□ 0.57
UPF3A-203ENST00000474056 ZBTB24O43167 697 aaPredicted RBP18.59■□□□□ 0.57
UPF3A-203ENST00000474056 DAB1O75553 588 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 MMEP08473 750 aa18.59■□□□□ 0.57
UPF3A-203ENST00000474056 HLA-EP13747 358 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms