RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 LRRC74BQ6ZQY2 392 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 ARID3BQ8IVW6 561 aaPredicted RBP10.23□□□□□ -0.77
SS18-203ENST00000415083 TEX9Q8N6V9 391 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 ARNTL2Q8WYA1 636 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 ZMAT2Q96NC0 199 aaKnown RBP10.23□□□□□ -0.77
SS18-203ENST00000415083 ANKRD27Q96NW4 1050 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 WDR35Q9P2L0 1181 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 ZC3H7BQ9UGR2 993 aaKnown RBP10.23□□□□□ -0.77
SS18-203ENST00000415083 SLC7A8Q9UHI5 535 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 PPM1HQ9ULR3 514 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 HBS1LQ9Y450 684 aaKnown RBP10.23□□□□□ -0.77
SS18-203ENST00000415083 A0A088AWK7 358 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 SDR42E2A6NKP2 422 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 MEI4A8MW99 385 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 USP1O94782 785 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 APOEP02649 317 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 APRTP07741 180 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 INHBAP08476 426 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 FGF3P11487 239 aaPredicted RBP10.22□□□□□ -0.77
SS18-203ENST00000415083 ARF4P18085 180 aaPredicted RBP10.22□□□□□ -0.77
SS18-203ENST00000415083 RPS12P25398 132 aaKnown RBP10.22□□□□□ -0.77
SS18-203ENST00000415083 ACAP1Q15027 740 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 SURF1Q15526 300 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 MROH9Q5TGP6 573 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 OTUD1Q5VV17 481 aaPredicted RBP10.22□□□□□ -0.77
SS18-203ENST00000415083 FAM172AQ8WUF8 416 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 HEXIM2Q96MH2 286 aaKnown RBP10.22□□□□□ -0.77
SS18-203ENST00000415083 SORT1Q99523 831 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 SPATC1LQ9H0A9 340 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 DPEP3Q9H4B8 488 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 PCMTD2Q9NV79 361 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 STX18Q9P2W9 335 aaKnown RBP10.22□□□□□ -0.77
SS18-203ENST00000415083 RGS17Q9UGC6 210 aaPredicted RBP10.22□□□□□ -0.77
SS18-203ENST00000415083 A0A087WZ62 844 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 H3BRJ5 948 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 DPYSL4O14531 572 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 COPEO14579 308 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 CLGNO14967 610 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 NVLO15381 856 aaKnown RBP10.22□□□□□ -0.77
SS18-203ENST00000415083 MED7O43513 233 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 BPGMP07738 259 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 AQP5P55064 265 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 PDE1BQ01064 536 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 SLC34A1Q06495 639 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 THEMIS2Q5TEJ8 643 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 MBLAC2Q68D91 279 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 PLPPR4Q7Z2D5 763 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 MYLK4Q86YV6 388 aaPredicted RBP10.22□□□□□ -0.77
SS18-203ENST00000415083 CCDC185Q8N715 623 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 SLC35F5Q8WV83 523 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 FDXACB1Q9BRP7 624 aaPredicted RBP10.22□□□□□ -0.77
SS18-203ENST00000415083 OXCT2Q9BYC2 517 aaPredicted RBP10.22□□□□□ -0.77
SS18-203ENST00000415083 ASNSD1Q9NWL6 643 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 PIM2Q9P1W9 311 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 MYLKQ15746 1914 aa10.22□□□□□ -0.77
SS18-203ENST00000415083 DNAJC25-GNG10A0A024R161 153 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 VDRP11473 427 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 VHLP40337 213 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 RASSF2P50749 326 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 PITX1P78337 314 aaPredicted RBP10.21□□□□□ -0.77
SS18-203ENST00000415083 NIPAL4Q0D2K0 466 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 SOWAHAQ2M3V2 549 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 TEDDM1Q5T9Z0 273 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 FAM160B1Q5W0V3 765 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 DCAF15Q66K64 600 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 OR6B2Q6IFH4 312 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 DEFB132Q7Z7B7 95 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 SLC25A41Q8N5S1 370 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 HPDLQ96IR7 371 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 KCTD15Q96SI1 283 aaPredicted RBP10.21□□□□□ -0.77
SS18-203ENST00000415083 SLC4A5Q9BY07 1137 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 NRDE2Q9H7Z3 1164 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 RPF1Q9H9Y2 349 aaKnown RBP10.21□□□□□ -0.77
SS18-203ENST00000415083 KCNK4Q9NYG8 393 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 GGA3Q9NZ52 723 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 GTF2IRD1Q9UHL9 959 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 B2RBV5 119 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 SNRPAP09012 282 aaKnown RBP10.21□□□□□ -0.77
SS18-203ENST00000415083 AP1B1Q10567 949 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 GOLGA7BQ2TAP0 167 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 RIPOR1Q6ZS17 1223 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 CTAGE3PQ8IX95 158 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 JDP2Q8WYK2 163 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 NDRG1Q92597 394 aaKnown RBP10.21□□□□□ -0.77
SS18-203ENST00000415083 USP6NLQ92738 828 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 E2F7Q96AV8 911 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 MOCOSQ96EN8 888 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 MMADHCQ9H3L0 296 aaPredicted RBP10.21□□□□□ -0.77
SS18-203ENST00000415083 SYNCQ9H7C4 482 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 ZNF358Q9NW07 568 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 PAK5Q9P286 719 aa10.21□□□□□ -0.77
SS18-203ENST00000415083 RNF8O76064 485 aa10.21□□□□□ -0.78
SS18-203ENST00000415083 VTNP04004 478 aa10.21□□□□□ -0.78
SS18-203ENST00000415083 OSBPP22059 807 aa10.21□□□□□ -0.78
SS18-203ENST00000415083 IGFBP6P24592 240 aaPredicted RBP10.21□□□□□ -0.78
SS18-203ENST00000415083 CRHR1P34998 444 aa10.21□□□□□ -0.78
SS18-203ENST00000415083 PEX6Q13608 980 aa10.21□□□□□ -0.78
SS18-203ENST00000415083 RALGPS1Q5JS13 557 aa10.21□□□□□ -0.78
SS18-203ENST00000415083 NCBP2-AS2Q69YL0 99 aa10.21□□□□□ -0.78
SS18-203ENST00000415083 TMEM154Q6P9G4 183 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms