RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ATP2C2O75185 946 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 FAM200BP0CF97 657 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 MMP8P22894 467 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 ADORA2BP29275 332 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 SSTR3P32745 418 aaPredicted RBP16.13■□□□□ 0.17
TRIM28-209ENST00000597423 ARHGAP25P42331 645 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 GPD2P43304 727 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 MAGEA10P43363 369 aaPredicted RBP16.13■□□□□ 0.17
TRIM28-209ENST00000597423 ACADSBP45954 432 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 PSMC1P62191 440 aaKnown RBP16.13■□□□□ 0.17
TRIM28-209ENST00000597423 RASIP1Q5U651 963 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 PALB2Q86YC2 1186 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 SPATA2LQ8IUW3 424 aaPredicted RBP16.13■□□□□ 0.17
TRIM28-209ENST00000597423 GPR65Q8IYL9 337 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 C1orf131Q8NDD1 294 aaKnown RBP16.13■□□□□ 0.17
TRIM28-209ENST00000597423 OLIG1Q8TAK6 271 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 UBA3Q8TBC4 463 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 UBE2Q2Q8WVN8 375 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 CLP1Q92989 425 aaKnown RBP16.13■□□□□ 0.17
TRIM28-209ENST00000597423 ZNF653Q96CK0 615 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 C18orf8Q96DM3 657 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 RNPC3Q96LT9 517 aaKnown RBP16.13■□□□□ 0.17
TRIM28-209ENST00000597423 ALS2CR12Q96Q35 445 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 DUSP16Q9BY84 665 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 UBXN6Q9BZV1 441 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 LACRTQ9GZZ8 138 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 CYLDQ9NQC7 956 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 AVENQ9NQS1 362 aaPredicted RBP16.13■□□□□ 0.17
TRIM28-209ENST00000597423 UVRAGQ9P2Y5 699 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 LCMT1Q9UIC8 334 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 GTF3C4Q9UKN8 822 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 NME7Q9Y5B8 376 aa16.13■□□□□ 0.17
TRIM28-209ENST00000597423 LTBP2Q14767 1821 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 MYBPHLA2RUH7 354 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 SOD2P04179 222 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 CYP1A2P05177 515 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 CFHP08603 1231 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 CCDC130P13994 396 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 PBX3P40426 434 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 GNG11P61952 73 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 CREMQ03060 361 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 TAP1Q03518 808 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 ZNF268Q14587 947 aaPredicted RBP16.12■□□□□ 0.17
TRIM28-209ENST00000597423 TCEAL1Q15170 157 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 WDTC1Q8N5D0 677 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 SP7Q8TDD2 431 aaPredicted RBP16.12■□□□□ 0.17
TRIM28-209ENST00000597423 RFFLQ8WZ73 363 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 SMARCD1Q96GM5 515 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 HSFY1Q96LI6 401 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 RTP3Q9BQQ7 232 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 PACSIN1Q9BY11 444 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 B3GNT5Q9BYG0 378 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 ZCWPW1Q9H0M4 648 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 THAP2Q9H0W7 228 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 CRTAC1Q9NQ79 661 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 PARVAQ9NVD7 372 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 CTTNBP2NLQ9P2B4 639 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 HCSTQ9UBK5 93 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 CNOT8Q9UFF9 292 aaKnown RBP16.12■□□□□ 0.17
TRIM28-209ENST00000597423 BACE2Q9Y5Z0 518 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 SCINQ9Y6U3 715 aa16.12■□□□□ 0.17
TRIM28-209ENST00000597423 MACROD2A1Z1Q3 448 aa16.11■□□□□ 0.17
TRIM28-209ENST00000597423 RCCD1A6NED2 376 aa16.11■□□□□ 0.17
TRIM28-209ENST00000597423 XPO1O14980 1071 aaKnown RBP16.11■□□□□ 0.17
TRIM28-209ENST00000597423 HCRTO43612 131 aa16.11■□□□□ 0.17
TRIM28-209ENST00000597423 NPR3P17342 541 aa16.11■□□□□ 0.17
TRIM28-209ENST00000597423 ETF1P62495 437 aaKnown RBP16.11■□□□□ 0.17
TRIM28-209ENST00000597423 PKDCCQ504Y2 493 aa16.11■□□□□ 0.17
TRIM28-209ENST00000597423 DNTTIP2Q5QJE6 756 aaKnown RBP16.11■□□□□ 0.17
TRIM28-209ENST00000597423 MMS22LQ6ZRQ5 1243 aa16.11■□□□□ 0.17
TRIM28-209ENST00000597423 MON1BQ7L1V2 547 aa16.11■□□□□ 0.17
TRIM28-209ENST00000597423 ZDHHC17Q8IUH5 632 aa16.11■□□□□ 0.17
TRIM28-209ENST00000597423 SYCE1Q8N0S2 351 aa16.11■□□□□ 0.17
TRIM28-209ENST00000597423 FUKQ8N0W3 1084 aa16.11■□□□□ 0.17
TRIM28-209ENST00000597423 TRIM58Q8NG06 486 aa16.11■□□□□ 0.17
TRIM28-209ENST00000597423 SLC35G2Q8TBE7 412 aa16.11■□□□□ 0.17
TRIM28-209ENST00000597423 C2orf15Q8WU43 125 aaKnown RBP16.11■□□□□ 0.17
TRIM28-209ENST00000597423 SLC35F5Q8WV83 523 aa16.11■□□□□ 0.17
TRIM28-209ENST00000597423 RIN2Q8WYP3 895 aaPredicted RBP16.11■□□□□ 0.17
TRIM28-209ENST00000597423 PCED1BQ96HM7 432 aa16.11■□□□□ 0.17
TRIM28-209ENST00000597423 FUBP3Q96I24 572 aaKnown RBP eCLIP16.11■□□□□ 0.17
TRIM28-209ENST00000597423 HERC2P3Q9BVR0 1158 aa16.11■□□□□ 0.17
TRIM28-209ENST00000597423 PLVAPQ9BX97 442 aa16.11■□□□□ 0.17
TRIM28-209ENST00000597423 UBE2OQ9C0C9 1292 aaKnown RBP16.11■□□□□ 0.17
TRIM28-209ENST00000597423 ST7Q9NRC1 585 aa16.11■□□□□ 0.17
TRIM28-209ENST00000597423 CHST7Q9NS84 486 aa16.11■□□□□ 0.17
TRIM28-209ENST00000597423 AP1G2O75843 785 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 EFEMP2O95967 443 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 URODP06132 367 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 TNNT1P13805 278 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 BMPR1AP36894 532 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 GLUD2P49448 558 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 PDE4CQ08493 712 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 PDCLQ13371 301 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 SLC39A12Q504Y0 691 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 ZNF569Q5MCW4 686 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 KIAA0319Q5VV43 1072 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 NYAP1Q6ZVC0 841 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 TTC30AQ86WT1 665 aa16.1■□□□□ 0.17
TRIM28-209ENST00000597423 OR10T2Q8NGX3 314 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms