RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 GRIK3Q13003 919 aa23.8■■□□□ 1.4
ATG4D-209ENST00000588857 SV2CQ496J9 727 aa23.8■■□□□ 1.4
ATG4D-209ENST00000588857 REXO1L1PQ8IX06 675 aa23.8■■□□□ 1.4
ATG4D-209ENST00000588857 TTC39CQ8N584 583 aa23.8■■□□□ 1.4
ATG4D-209ENST00000588857 SLC20A1Q8WUM9 679 aa23.8■■□□□ 1.4
ATG4D-209ENST00000588857 LBHD1Q9BQE6 289 aaPredicted RBP23.8■■□□□ 1.4
ATG4D-209ENST00000588857 FAM124BQ9H5Z6 455 aaPredicted RBP23.8■■□□□ 1.4
ATG4D-209ENST00000588857 SMYD3Q9H7B4 428 aa23.8■■□□□ 1.4
ATG4D-209ENST00000588857 RNF216Q9NWF9 866 aaPredicted RBP23.8■■□□□ 1.4
ATG4D-209ENST00000588857 NOCTQ9UK39 431 aaKnown RBP23.8■■□□□ 1.4
ATG4D-209ENST00000588857 PCDHB7Q9Y5E2 793 aa23.8■■□□□ 1.4
ATG4D-209ENST00000588857 PCDHA13Q9Y5I0 950 aa23.8■■□□□ 1.4
ATG4D-209ENST00000588857 SNX9Q9Y5X1 595 aa23.8■■□□□ 1.4
ATG4D-209ENST00000588857 TTC3P53804 2025 aa23.79■■□□□ 1.4
ATG4D-209ENST00000588857 A0A1W2PPC1 479 aa23.79■■□□□ 1.4
ATG4D-209ENST00000588857 ZNF263O14978 683 aa23.79■■□□□ 1.4
ATG4D-209ENST00000588857 INPPL1O15357 1258 aa23.79■■□□□ 1.4
ATG4D-209ENST00000588857 TIMP1P01033 207 aa23.79■■□□□ 1.4
ATG4D-209ENST00000588857 RAP1GAPP47736 663 aa23.79■■□□□ 1.4
ATG4D-209ENST00000588857 NAB2Q15742 525 aa23.79■■□□□ 1.4
ATG4D-209ENST00000588857 NOP9Q86U38 636 aaKnown RBP23.79■■□□□ 1.4
ATG4D-209ENST00000588857 GLYCTKQ8IVS8 523 aa23.79■■□□□ 1.4
ATG4D-209ENST00000588857 TXLNBQ8N3L3 684 aa23.79■■□□□ 1.4
ATG4D-209ENST00000588857 URGCPQ8TCY9 931 aa23.79■■□□□ 1.4
ATG4D-209ENST00000588857 SYT11Q9BT88 431 aa23.79■■□□□ 1.4
ATG4D-209ENST00000588857 ACP6Q9NPH0 428 aa23.79■■□□□ 1.4
ATG4D-209ENST00000588857 LRFN2Q9ULH4 789 aa23.79■■□□□ 1.4
ATG4D-209ENST00000588857 KPNA7A9QM74 516 aa23.78■■□□□ 1.4
ATG4D-209ENST00000588857 DDX3XO00571 662 aaKnown RBP eCLIP23.78■■□□□ 1.43e-7■■■■□ 19.9
ATG4D-209ENST00000588857 KIAA0355O15063 1070 aa23.78■■□□□ 1.4
ATG4D-209ENST00000588857 RPL9P32969 192 aaKnown RBP23.78■■□□□ 1.4
ATG4D-209ENST00000588857 MAGEA1P43355 309 aa23.78■■□□□ 1.4
ATG4D-209ENST00000588857 CDH8P55286 799 aa23.78■■□□□ 1.4
ATG4D-209ENST00000588857 C10orf76Q5T2E6 689 aa23.78■■□□□ 1.4
ATG4D-209ENST00000588857 RPUSD2Q8IZ73 545 aaKnown RBP23.78■■□□□ 1.4
ATG4D-209ENST00000588857 NAGPAQ9UK23 515 aa23.78■■□□□ 1.4
ATG4D-209ENST00000588857 RAG1P15918 1043 aa23.78■■□□□ 1.4
ATG4D-209ENST00000588857 ZNF132P52740 706 aa23.78■■□□□ 1.4
ATG4D-209ENST00000588857 CDR2Q01850 454 aa23.78■■□□□ 1.4
ATG4D-209ENST00000588857 IKBKEQ14164 716 aa23.78■■□□□ 1.4
ATG4D-209ENST00000588857 TCTN1Q2MV58 587 aa23.78■■□□□ 1.4
ATG4D-209ENST00000588857 ARHGAP29Q52LW3 1261 aa23.78■■□□□ 1.4
ATG4D-209ENST00000588857 TAF3Q5VWG9 929 aa23.78■■□□□ 1.4
ATG4D-209ENST00000588857 CNKSR3Q6P9H4 555 aa23.78■■□□□ 1.4
ATG4D-209ENST00000588857 ZNF677Q86XU0 584 aa23.78■■□□□ 1.4
ATG4D-209ENST00000588857 SLC30A5Q8TAD4 765 aa23.78■■□□□ 1.4
ATG4D-209ENST00000588857 DDX27Q96GQ7 796 aaKnown RBP23.78■■□□□ 1.4
ATG4D-209ENST00000588857 SDCBP2Q9H190 292 aa23.78■■□□□ 1.4
ATG4D-209ENST00000588857 LZTFL1Q9NQ48 299 aa23.78■■□□□ 1.4
ATG4D-209ENST00000588857 PODXLO00592 558 aa23.77■■□□□ 1.4
ATG4D-209ENST00000588857 FGFR1P11362 822 aa23.77■■□□□ 1.4
ATG4D-209ENST00000588857 GNA15P30679 374 aa23.77■■□□□ 1.4
ATG4D-209ENST00000588857 VAV2P52735 878 aa23.77■■□□□ 1.4
ATG4D-209ENST00000588857 LILRA4P59901 499 aa23.77■■□□□ 1.4
ATG4D-209ENST00000588857 TUSC3Q13454 348 aa23.77■■□□□ 1.4
ATG4D-209ENST00000588857 NOMO2Q5JPE7 1267 aa23.77■■□□□ 1.4
ATG4D-209ENST00000588857 CLLU1OSQ5K130 101 aa23.77■■□□□ 1.4
ATG4D-209ENST00000588857 CCDC122Q5T0U0 273 aa23.77■■□□□ 1.4
ATG4D-209ENST00000588857 ALKBH5Q6P6C2 394 aaKnown RBP23.77■■□□□ 1.4
ATG4D-209ENST00000588857 ABI1Q8IZP0 508 aa23.77■■□□□ 1.4
ATG4D-209ENST00000588857 LNX1Q8TBB1 728 aaPredicted RBP23.77■■□□□ 1.4
ATG4D-209ENST00000588857 UBE2OQ9C0C9 1292 aaKnown RBP23.77■■□□□ 1.4
ATG4D-209ENST00000588857 GDAP2Q9NXN4 497 aa23.77■■□□□ 1.4
ATG4D-209ENST00000588857 KANSL3Q9P2N6 904 aa23.77■■□□□ 1.4
ATG4D-209ENST00000588857 CASTOR2A6NHX0 329 aa23.76■■□□□ 1.39
ATG4D-209ENST00000588857 CLCNKBP51801 687 aa23.76■■□□□ 1.39
ATG4D-209ENST00000588857 ZNF394Q53GI3 561 aa23.76■■□□□ 1.39
ATG4D-209ENST00000588857 UROC1Q96N76 676 aa23.76■■□□□ 1.39
ATG4D-209ENST00000588857 PUF60Q9UHX1 559 aaKnown RBP23.76■■□□□ 1.39
ATG4D-209ENST00000588857 HOXA2O43364 376 aa23.75■■□□□ 1.39
ATG4D-209ENST00000588857 CILPO75339 1184 aa23.75■■□□□ 1.39
ATG4D-209ENST00000588857 MMEP08473 750 aa23.75■■□□□ 1.39
ATG4D-209ENST00000588857 CHRNB2P17787 502 aa23.75■■□□□ 1.39
ATG4D-209ENST00000588857 ITGB8P26012 769 aa23.75■■□□□ 1.39
ATG4D-209ENST00000588857 KIF5AQ12840 1032 aa23.75■■□□□ 1.39
ATG4D-209ENST00000588857 PTPN14Q15678 1187 aa23.75■■□□□ 1.39
ATG4D-209ENST00000588857 TMEM199Q8N511 208 aa23.75■■□□□ 1.39
ATG4D-209ENST00000588857 DDX1Q92499 740 aaKnown RBP23.75■■□□□ 1.39
ATG4D-209ENST00000588857 BADQ92934 168 aa23.75■■□□□ 1.39
ATG4D-209ENST00000588857 C16orf45Q96MC5 204 aaPredicted RBP23.75■■□□□ 1.39
ATG4D-209ENST00000588857 TSGA10Q9BZW7 698 aa23.75■■□□□ 1.39
ATG4D-209ENST00000588857 PDCL3Q9H2J4 239 aa23.75■■□□□ 1.39
ATG4D-209ENST00000588857 BARX2Q9UMQ3 279 aaPredicted RBP23.75■■□□□ 1.39
ATG4D-209ENST00000588857 TRIOBPQ9H2D6 2365 aa23.75■■□□□ 1.39
ATG4D-209ENST00000588857 LOC101059915A0A1B0GWI6 518 aaPredicted RBP23.74■■□□□ 1.39
ATG4D-209ENST00000588857 SPTLC1O15269 473 aa23.74■■□□□ 1.39
ATG4D-209ENST00000588857 THAP12O43422 761 aa23.74■■□□□ 1.39
ATG4D-209ENST00000588857 HUS1O60921 280 aa23.74■■□□□ 1.39
ATG4D-209ENST00000588857 CALCAP01258 141 aa23.74■■□□□ 1.39
ATG4D-209ENST00000588857 FMO1Q01740 532 aa23.74■■□□□ 1.39
ATG4D-209ENST00000588857 RNASELQ05823 741 aaKnown RBP23.74■■□□□ 1.39
ATG4D-209ENST00000588857 INCA1Q0VD86 236 aa23.74■■□□□ 1.39
ATG4D-209ENST00000588857 UPP1Q16831 310 aa23.74■■□□□ 1.39
ATG4D-209ENST00000588857 ZNF662Q6ZS27 426 aa23.74■■□□□ 1.39
ATG4D-209ENST00000588857 APPL2Q8NEU8 664 aa23.74■■□□□ 1.39
ATG4D-209ENST00000588857 CACNG4Q9UBN1 327 aa23.74■■□□□ 1.39
ATG4D-209ENST00000588857 A0A0U1RQJ8 604 aa23.74■■□□□ 1.39
ATG4D-209ENST00000588857 KRT86O43790 486 aa23.74■■□□□ 1.39
ATG4D-209ENST00000588857 PAEPP09466 180 aa23.74■■□□□ 1.39
ATG4D-209ENST00000588857 SOWAHAQ2M3V2 549 aa23.74■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms