RNA–Protein interactions for RNA: ENST00000513139.1

SPCS3-204, Transcript of signal peptidase complex subunit 3, humanhuman

TSL 2

Gene SPCS3, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3-204ENST00000513139 STAG2Q8N3U4 1231 aa16.11■□□□□ 0.17
SPCS3-204ENST00000513139 B4E1Z4 1266 aa16.1■□□□□ 0.17
SPCS3-204ENST00000513139 GFRA3O60609 400 aa16.1■□□□□ 0.17
SPCS3-204ENST00000513139 ITGB1P05556 798 aa16.1■□□□□ 0.17
SPCS3-204ENST00000513139 MRPS9P82933 396 aaKnown RBP16.1■□□□□ 0.17
SPCS3-204ENST00000513139 MGAT3Q09327 533 aa16.1■□□□□ 0.17
SPCS3-204ENST00000513139 LPIN1Q14693 890 aa16.1■□□□□ 0.17
SPCS3-204ENST00000513139 RSPH3Q86UC2 560 aa16.1■□□□□ 0.17
SPCS3-204ENST00000513139 CMTR2Q8IYT2 770 aaKnown RBP16.1■□□□□ 0.17
SPCS3-204ENST00000513139 CRIPAKQ8N1N5 446 aa16.1■□□□□ 0.17
SPCS3-204ENST00000513139 SPPL3Q8TCT6 385 aa16.1■□□□□ 0.17
SPCS3-204ENST00000513139 SENP7Q9BQF6 1050 aa16.1■□□□□ 0.17
SPCS3-204ENST00000513139 PHF7Q9BWX1 381 aaPredicted RBP16.1■□□□□ 0.17
SPCS3-204ENST00000513139 FRMPD4Q14CM0 1322 aa16.1■□□□□ 0.17
SPCS3-204ENST00000513139 FNDC1Q4ZHG4 1894 aaPredicted RBP16.1■□□□□ 0.17
SPCS3-204ENST00000513139 WDR87Q6ZQQ6 2873 aa16.09■□□□□ 0.17
SPCS3-204ENST00000513139 FIBPO43427 364 aa16.09■□□□□ 0.17
SPCS3-204ENST00000513139 RPLP2P05387 115 aaKnown RBP16.09■□□□□ 0.17
SPCS3-204ENST00000513139 ATF7P17544 494 aaPredicted RBP16.09■□□□□ 0.17
SPCS3-204ENST00000513139 DNAJB1P25685 340 aa16.09■□□□□ 0.17
SPCS3-204ENST00000513139 FBXO47Q5MNV8 452 aa16.09■□□□□ 0.17
SPCS3-204ENST00000513139 ANKRD45Q5TZF3 282 aa16.09■□□□□ 0.17
SPCS3-204ENST00000513139 TSHZ1Q6ZSZ6 1077 aa16.09■□□□□ 0.17
SPCS3-204ENST00000513139 FCHSD1Q86WN1 690 aa16.09■□□□□ 0.17
SPCS3-204ENST00000513139 TRIM50Q86XT4 487 aa16.09■□□□□ 0.17
SPCS3-204ENST00000513139 PIP4P2Q8N4L2 257 aa16.09■□□□□ 0.17
SPCS3-204ENST00000513139 ZFP91Q96JP5 570 aaPredicted RBP16.09■□□□□ 0.17
SPCS3-204ENST00000513139 KRT23Q9C075 422 aa16.09■□□□□ 0.17
SPCS3-204ENST00000513139 MAD2L2Q9UI95 211 aa16.09■□□□□ 0.17
SPCS3-204ENST00000513139 USP15Q9Y4E8 981 aaPredicted RBP16.09■□□□□ 0.17
SPCS3-204ENST00000513139 MRPL42Q9Y6G3 142 aaKnown RBP16.09■□□□□ 0.17
SPCS3-204ENST00000513139 SQORQ9Y6N5 450 aa16.09■□□□□ 0.17
SPCS3-204ENST00000513139 FSD2A1L4K1 749 aa16.08■□□□□ 0.16
SPCS3-204ENST00000513139 PALM3A6NDB9 673 aaPredicted RBP16.08■□□□□ 0.16
SPCS3-204ENST00000513139 SEMA3FQ13275 785 aa16.08■□□□□ 0.16
SPCS3-204ENST00000513139 IFIT1BQ5T764 474 aaKnown RBP16.08■□□□□ 0.16
SPCS3-204ENST00000513139 ADGRD2Q7Z7M1 963 aa16.08■□□□□ 0.16
SPCS3-204ENST00000513139 GIMAP8Q8ND71 665 aaPredicted RBP16.08■□□□□ 0.16
SPCS3-204ENST00000513139 ASIC4Q96FT7 647 aa16.08■□□□□ 0.16
SPCS3-204ENST00000513139 UBAC1Q9BSL1 405 aa16.08■□□□□ 0.16
SPCS3-204ENST00000513139 FTHL17Q9BXU8 183 aa16.08■□□□□ 0.16
SPCS3-204ENST00000513139 CNNM2Q9H8M5 875 aa16.08■□□□□ 0.16
SPCS3-204ENST00000513139 DCHS1Q96JQ0 3298 aa16.07■□□□□ 0.16
SPCS3-204ENST00000513139 MBLAC1A4D2B0 266 aaPredicted RBP16.07■□□□□ 0.16
SPCS3-204ENST00000513139 GLP2RO95838 553 aa16.07■□□□□ 0.16
SPCS3-204ENST00000513139 AVPR2P30518 371 aa16.07■□□□□ 0.16
SPCS3-204ENST00000513139 NRIP1P48552 1158 aa16.07■□□□□ 0.16
SPCS3-204ENST00000513139 UTP14CQ5TAP6 766 aaKnown RBP16.07■□□□□ 0.16
SPCS3-204ENST00000513139 RUFY4Q6ZNE9 571 aa16.07■□□□□ 0.16
SPCS3-204ENST00000513139 NPAS4Q8IUM7 802 aa16.07■□□□□ 0.16
SPCS3-204ENST00000513139 KLHL23Q8NBE8 558 aa16.07■□□□□ 0.16
SPCS3-204ENST00000513139 POF1BQ8WVV4 589 aa16.07■□□□□ 0.16
SPCS3-204ENST00000513139 RIOX1Q9H6W3 641 aa16.07■□□□□ 0.16
SPCS3-204ENST00000513139 PROB1E7EW31 1015 aa16.06■□□□□ 0.16
SPCS3-204ENST00000513139 CSPG5O95196 566 aa16.06■□□□□ 0.16
SPCS3-204ENST00000513139 STAG3L1P0CL83 205 aa16.06■□□□□ 0.16
SPCS3-204ENST00000513139 SDSP20132 328 aa16.06■□□□□ 0.16
SPCS3-204ENST00000513139 PPFIA1Q13136 1202 aa16.06■□□□□ 0.16
SPCS3-204ENST00000513139 IMMTQ16891 758 aaKnown RBP16.06■□□□□ 0.16
SPCS3-204ENST00000513139 XRRA1Q6P2D8 792 aa16.06■□□□□ 0.16
SPCS3-204ENST00000513139 FAM43BQ6ZT52 329 aaPredicted RBP16.06■□□□□ 0.16
SPCS3-204ENST00000513139 SUSD6Q92537 303 aa16.06■□□□□ 0.16
SPCS3-204ENST00000513139 TUBE1Q9UJT0 475 aa16.06■□□□□ 0.16
SPCS3-204ENST00000513139 BARX2Q9UMQ3 279 aaPredicted RBP16.06■□□□□ 0.16
SPCS3-204ENST00000513139 PNMA6FA0A0J9YX94 578 aa16.05■□□□□ 0.16
SPCS3-204ENST00000513139 VCPP55072 806 aaKnown RBP16.05■□□□□ 0.16
SPCS3-204ENST00000513139 UBE3AQ05086 875 aa16.05■□□□□ 0.16
SPCS3-204ENST00000513139 SEC23AQ15436 765 aa16.05■□□□□ 0.16
SPCS3-204ENST00000513139 PCNX4Q63HM2 1172 aa16.05■□□□□ 0.16
SPCS3-204ENST00000513139 RTN4RL1Q86UN2 441 aaPredicted RBP16.05■□□□□ 0.16
SPCS3-204ENST00000513139 HOMER1Q86YM7 354 aa16.05■□□□□ 0.16
SPCS3-204ENST00000513139 ATP8B4Q8TF62 1192 aa16.05■□□□□ 0.16
SPCS3-204ENST00000513139 DNAJB3Q8WWF6 145 aa16.05■□□□□ 0.16
SPCS3-204ENST00000513139 LINC01599Q8WXQ3 324 aa16.05■□□□□ 0.16
SPCS3-204ENST00000513139 ATOH1Q92858 354 aaPredicted RBP16.05■□□□□ 0.16
SPCS3-204ENST00000513139 RPGRIP1Q96KN7 1286 aa16.05■□□□□ 0.16
SPCS3-204ENST00000513139 PIGSQ96S52 555 aa16.05■□□□□ 0.16
SPCS3-204ENST00000513139 DSCC1Q9BVC3 393 aa16.05■□□□□ 0.16
SPCS3-204ENST00000513139 TLE6Q9H808 572 aa16.05■□□□□ 0.16
SPCS3-204ENST00000513139 AGO3Q9H9G7 860 aaKnown RBP16.05■□□□□ 0.16
SPCS3-204ENST00000513139 FAM86C1Q9NVL1 165 aa16.05■□□□□ 0.16
SPCS3-204ENST00000513139 ERAP1Q9NZ08 941 aa16.05■□□□□ 0.16
SPCS3-204ENST00000513139 RTEL1Q9NZ71 1219 aa16.05■□□□□ 0.16
SPCS3-204ENST00000513139 CDY2AQ9Y6F7 541 aa16.05■□□□□ 0.16
SPCS3-204ENST00000513139 TCF7P36402 384 aaPredicted RBP16.04■□□□□ 0.16
SPCS3-204ENST00000513139 MRPS6P82932 125 aaKnown RBP16.04■□□□□ 0.16
SPCS3-204ENST00000513139 GRIK4Q16099 956 aa16.04■□□□□ 0.16
SPCS3-204ENST00000513139 PTPN21Q16825 1174 aa16.04■□□□□ 0.16
SPCS3-204ENST00000513139 SLC35G1Q2M3R5 365 aa16.04■□□□□ 0.16
SPCS3-204ENST00000513139 MARCH8Q5T0T0 291 aa16.04■□□□□ 0.16
SPCS3-204ENST00000513139 IER5Q5VY09 327 aa16.04■□□□□ 0.16
SPCS3-204ENST00000513139 RBM23Q86U06 439 aaKnown RBP16.04■□□□□ 0.16
SPCS3-204ENST00000513139 RILPL2Q969X0 211 aa16.04■□□□□ 0.16
SPCS3-204ENST00000513139 CDCA3Q99618 268 aaPredicted RBP16.04■□□□□ 0.16
SPCS3-204ENST00000513139 TELO2Q9Y4R8 837 aa16.04■□□□□ 0.16
SPCS3-204ENST00000513139 EVPLQ92817 2033 aa16.03■□□□□ 0.16
SPCS3-204ENST00000513139 CD52P31358 61 aa16.03■□□□□ 0.16
SPCS3-204ENST00000513139 GRM4Q14833 912 aa16.03■□□□□ 0.16
SPCS3-204ENST00000513139 PDE12Q6L8Q7 609 aaKnown RBP16.03■□□□□ 0.16
SPCS3-204ENST00000513139 NLRX1Q86UT6 975 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms