RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SORBS3O60504 671 aa22.25■■□□□ 1.15
UPF1-207ENST00000599848 TRIM62Q9BVG3 475 aa22.25■■□□□ 1.15
UPF1-207ENST00000599848 GDF11O95390 407 aa22.25■■□□□ 1.15
UPF1-207ENST00000599848 KCNV1Q6PIU1 500 aa22.25■■□□□ 1.15
UPF1-207ENST00000599848 SRRM1Q8IYB3 904 aaKnown RBP22.25■■□□□ 1.15
UPF1-207ENST00000599848 HDAC11Q96DB2 347 aa22.25■■□□□ 1.15
UPF1-207ENST00000599848 KIAA1586Q9HCI6 787 aa22.25■■□□□ 1.15
UPF1-207ENST00000599848 DENND3A2RUS2 1198 aa22.25■■□□□ 1.15
UPF1-207ENST00000599848 TYW1BQ6NUM6 668 aa22.25■■□□□ 1.15
UPF1-207ENST00000599848 CCHCR1Q8TD31 782 aa22.25■■□□□ 1.15
UPF1-207ENST00000599848 SDCCAG3Q96C92 435 aa22.25■■□□□ 1.15
UPF1-207ENST00000599848 TRIM31Q9BZY9 425 aa22.25■■□□□ 1.15
UPF1-207ENST00000599848 BLZF1Q9H2G9 400 aa22.25■■□□□ 1.15
UPF1-207ENST00000599848 ABCC12Q96J65 1359 aa22.25■■□□□ 1.15
UPF1-207ENST00000599848 ECE1P42892 770 aa22.25■■□□□ 1.15
UPF1-207ENST00000599848 SLF1Q9BQI6 1058 aa22.25■■□□□ 1.15
UPF1-207ENST00000599848 SAMD9Q5K651 1589 aa22.25■■□□□ 1.15
UPF1-207ENST00000599848 ASB14A6NK59 587 aa22.24■■□□□ 1.15
UPF1-207ENST00000599848 KYAT1Q16773 422 aa22.24■■□□□ 1.15
UPF1-207ENST00000599848 MCPH1Q8NEM0 835 aa22.24■■□□□ 1.15
UPF1-207ENST00000599848 CHMP6Q96FZ7 201 aa22.24■■□□□ 1.15
UPF1-207ENST00000599848 HYOU1Q9Y4L1 999 aa22.24■■□□□ 1.15
UPF1-207ENST00000599848 CARMIL3Q8ND23 1372 aa22.24■■□□□ 1.15
UPF1-207ENST00000599848 CPA1P15085 419 aa22.24■■□□□ 1.15
UPF1-207ENST00000599848 CDC42EP1Q00587 391 aa22.24■■□□□ 1.15
UPF1-207ENST00000599848 RAET1EQ8TD07 263 aa22.24■■□□□ 1.15
UPF1-207ENST00000599848 RILPQ96NA2 401 aa22.24■■□□□ 1.15
UPF1-207ENST00000599848 ZNF131P52739 623 aa22.24■■□□□ 1.15
UPF1-207ENST00000599848 NLRP10Q86W26 655 aa22.24■■□□□ 1.15
UPF1-207ENST00000599848 TRIM42Q8IWZ5 723 aa22.24■■□□□ 1.15
UPF1-207ENST00000599848 KLHL7Q8IXQ5 586 aa22.24■■□□□ 1.15
UPF1-207ENST00000599848 ERBB3P21860 1342 aa22.24■■□□□ 1.15
UPF1-207ENST00000599848 C21orf2O43822 256 aa22.24■■□□□ 1.15
UPF1-207ENST00000599848 FGAP02671 866 aa22.24■■□□□ 1.15
UPF1-207ENST00000599848 CMA1P23946 247 aa22.24■■□□□ 1.15
UPF1-207ENST00000599848 C7orf31Q8N865 590 aa22.24■■□□□ 1.15
UPF1-207ENST00000599848 ZC3H15Q8WU90 426 aaKnown RBP22.24■■□□□ 1.15
UPF1-207ENST00000599848 CA4P22748 312 aa22.23■■□□□ 1.15
UPF1-207ENST00000599848 RNASE9P60153 205 aaKnown RBP22.23■■□□□ 1.15
UPF1-207ENST00000599848 VPS18Q9P253 973 aa22.23■■□□□ 1.15
UPF1-207ENST00000599848 PASKQ96RG2 1323 aa22.23■■□□□ 1.15
UPF1-207ENST00000599848 hCG_1642624A0A1W2PR95 340 aa22.23■■□□□ 1.15
UPF1-207ENST00000599848 ATF2P15336 505 aa22.23■■□□□ 1.15
UPF1-207ENST00000599848 EFHBQ8N7U6 833 aa22.23■■□□□ 1.15
UPF1-207ENST00000599848 PI4K2BQ8TCG2 481 aa22.23■■□□□ 1.15
UPF1-207ENST00000599848 ATP6V1E2Q96A05 226 aa22.23■■□□□ 1.15
UPF1-207ENST00000599848 TFAMQ00059 246 aaKnown RBP22.23■■□□□ 1.15
UPF1-207ENST00000599848 CYP4A11Q02928 519 aa22.23■■□□□ 1.15
UPF1-207ENST00000599848 RFX6Q8HWS3 928 aa22.23■■□□□ 1.15
UPF1-207ENST00000599848 YAF2Q8IY57 180 aa22.23■■□□□ 1.15
UPF1-207ENST00000599848 FAM71BQ8TC56 605 aa22.23■■□□□ 1.15
UPF1-207ENST00000599848 DHTKD1Q96HY7 919 aaPredicted RBP22.23■■□□□ 1.15
UPF1-207ENST00000599848 C2orf40Q9H1Z8 148 aa22.23■■□□□ 1.15
UPF1-207ENST00000599848 JCADQ9P266 1359 aa22.23■■□□□ 1.15
UPF1-207ENST00000599848 PSMD2Q13200 908 aa22.23■■□□□ 1.15
UPF1-207ENST00000599848 AFAP1L1Q8TED9 768 aa22.23■■□□□ 1.15
UPF1-207ENST00000599848 EDEM3Q9BZQ6 932 aa22.23■■□□□ 1.15
UPF1-207ENST00000599848 USP44Q9H0E7 712 aa22.23■■□□□ 1.15
UPF1-207ENST00000599848 GPC4O75487 556 aa22.22■■□□□ 1.15
UPF1-207ENST00000599848 RPN1P04843 607 aaKnown RBP22.22■■□□□ 1.15
UPF1-207ENST00000599848 TCP1P17987 556 aaKnown RBP22.22■■□□□ 1.15
UPF1-207ENST00000599848 PZPP20742 1482 aa22.22■■□□□ 1.15
UPF1-207ENST00000599848 KCNJ6P48051 423 aa22.22■■□□□ 1.15
UPF1-207ENST00000599848 COG7P83436 770 aa22.22■■□□□ 1.15
UPF1-207ENST00000599848 GPKOWQ92917 476 aaPredicted RBP eCLIP22.22■■□□□ 1.15
UPF1-207ENST00000599848 LRRC24Q50LG9 513 aa22.22■■□□□ 1.15
UPF1-207ENST00000599848 NEK9Q8TD19 979 aa22.22■■□□□ 1.15
UPF1-207ENST00000599848 DHX38Q92620 1227 aaKnown RBP22.22■■□□□ 1.15
UPF1-207ENST00000599848 PNMA6FA0A0J9YX94 578 aa22.22■■□□□ 1.15
UPF1-207ENST00000599848 IGSF1Q8N6C5 1336 aa22.22■■□□□ 1.15
UPF1-207ENST00000599848 VEPH1Q14D04 833 aa22.22■■□□□ 1.15
UPF1-207ENST00000599848 DIXDC1Q155Q3 683 aa22.22■■□□□ 1.15
UPF1-207ENST00000599848 MTERF2Q49AM1 385 aa22.22■■□□□ 1.15
UPF1-207ENST00000599848 JADE1Q6IE81 842 aa22.22■■□□□ 1.15
UPF1-207ENST00000599848 ZNF148Q9UQR1 794 aa22.22■■□□□ 1.15
UPF1-207ENST00000599848 ABCB4P21439 1286 aa22.21■■□□□ 1.15
UPF1-207ENST00000599848 THOC5Q13769 683 aaKnown RBP22.21■■□□□ 1.15
UPF1-207ENST00000599848 NOP9Q86U38 636 aaKnown RBP22.21■■□□□ 1.15
UPF1-207ENST00000599848 FAM186BQ8IYM0 893 aa22.21■■□□□ 1.15
UPF1-207ENST00000599848 SYNJ2BP-COX16A0A087WUM0 186 aa22.21■■□□□ 1.15
UPF1-207ENST00000599848 STX1BP61266 288 aa22.21■■□□□ 1.15
UPF1-207ENST00000599848 PSMD6Q15008 389 aa22.21■■□□□ 1.15
UPF1-207ENST00000599848 ZMYM1Q5SVZ6 1142 aa22.21■■□□□ 1.15
UPF1-207ENST00000599848 TBC1D22BQ9NU19 505 aa22.21■■□□□ 1.15
UPF1-207ENST00000599848 COX16Q9P0S2 106 aa22.21■■□□□ 1.15
UPF1-207ENST00000599848 ABCB11O95342 1321 aa22.21■■□□□ 1.15
UPF1-207ENST00000599848 IFNA8P32881 189 aa22.21■■□□□ 1.15
UPF1-207ENST00000599848 GDAP1Q8TB36 358 aa22.21■■□□□ 1.15
UPF1-207ENST00000599848 ABCA5Q8WWZ7 1642 aa22.21■■□□□ 1.15
UPF1-207ENST00000599848 LMNTD2Q8IXW0 634 aa22.21■■□□□ 1.15
UPF1-207ENST00000599848 NSUN6Q8TEA1 469 aaKnown RBP22.21■■□□□ 1.15
UPF1-207ENST00000599848 NFX1Q12986 1120 aaKnown RBP22.21■■□□□ 1.15
UPF1-207ENST00000599848 TSNAXIP1Q2TAA8 658 aa22.21■■□□□ 1.15
UPF1-207ENST00000599848 GJA10Q969M2 543 aa22.21■■□□□ 1.15
UPF1-207ENST00000599848 EAF2Q96CJ1 260 aaPredicted RBP22.21■■□□□ 1.15
UPF1-207ENST00000599848 ABCC4O15439 1325 aa22.2■■□□□ 1.15
UPF1-207ENST00000599848 SPATA31A6Q5VVP1 1343 aa22.2■■□□□ 1.15
UPF1-207ENST00000599848 MCF2LO15068 1137 aa22.2■■□□□ 1.14
UPF1-207ENST00000599848 MGEA5O60502 916 aa22.2■■□□□ 1.14
UPF1-207ENST00000599848 HPDP32754 393 aaPredicted RBP22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms