RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 USP53Q70EK8 1073 aa7.11□□□□□ -1.27
CD44-231ENST00000531110 SYNPOQ8N3V7 929 aa7.11□□□□□ -1.27
CD44-231ENST00000531110 PEX11GQ96HA9 241 aa7.11□□□□□ -1.27
CD44-231ENST00000531110 PPP1R16BQ96T49 567 aa7.11□□□□□ -1.27
CD44-231ENST00000531110 CHMP4BQ9H444 224 aaKnown RBP7.11□□□□□ -1.27
CD44-231ENST00000531110 KLHL14Q9P2G3 628 aa7.11□□□□□ -1.27
CD44-231ENST00000531110 NUDT5Q9UKK9 219 aa7.11□□□□□ -1.27
CD44-231ENST00000531110 GOLGA6L3A6NEY3 463 aa7.1□□□□□ -1.27
CD44-231ENST00000531110 AQP7O14520 342 aa7.1□□□□□ -1.27
CD44-231ENST00000531110 KCNQ2O43526 872 aa7.1□□□□□ -1.27
CD44-231ENST00000531110 ZBTB7AO95365 584 aa7.1□□□□□ -1.27
CD44-231ENST00000531110 C6orf222P0C671 652 aaPredicted RBP7.1□□□□□ -1.27
CD44-231ENST00000531110 GALK1P51570 392 aa7.1□□□□□ -1.27
CD44-231ENST00000531110 SLC9A5Q14940 896 aa7.1□□□□□ -1.27
CD44-231ENST00000531110 KIZQ2M2Z5 673 aa7.1□□□□□ -1.27
CD44-231ENST00000531110 TRIM61Q5EBN2 209 aa7.1□□□□□ -1.27
CD44-231ENST00000531110 FAM209AQ5JX71 171 aa7.1□□□□□ -1.27
CD44-231ENST00000531110 FOXB2Q5VYV0 432 aa7.1□□□□□ -1.27
CD44-231ENST00000531110 RPTNQ6XPR3 784 aa7.1□□□□□ -1.27
CD44-231ENST00000531110 DCP2Q8IU60 420 aaKnown RBP7.1□□□□□ -1.27
CD44-231ENST00000531110 IFNL3Q8IZI9 196 aa7.1□□□□□ -1.27
CD44-231ENST00000531110 TSPAN17Q96FV3 270 aa7.1□□□□□ -1.27
CD44-231ENST00000531110 TMEM169Q96HH4 297 aa7.1□□□□□ -1.27
CD44-231ENST00000531110 PHF20Q9BVI0 1012 aa7.1□□□□□ -1.27
CD44-231ENST00000531110 PIF1Q9H611 641 aa7.1□□□□□ -1.27
CD44-231ENST00000531110 TMEM260Q9NX78 707 aa7.1□□□□□ -1.27
CD44-231ENST00000531110 RWDD3Q9Y3V2 267 aa7.1□□□□□ -1.27
CD44-231ENST00000531110 PTCH2Q9Y6C5 1203 aa7.1□□□□□ -1.27
CD44-231ENST00000531110 EFCAB14O75071 495 aa7.09□□□□□ -1.27
CD44-231ENST00000531110 KIF20AO95235 890 aa7.09□□□□□ -1.27
CD44-231ENST00000531110 TPM2P07951 284 aa7.09□□□□□ -1.27
CD44-231ENST00000531110 MED14OSP0DP75 135 aa7.09□□□□□ -1.27
CD44-231ENST00000531110 GLDCP23378 1020 aa7.09□□□□□ -1.27
CD44-231ENST00000531110 TERF1P54274 439 aa7.09□□□□□ -1.27
CD44-231ENST00000531110 RAB3GAP1Q15042 981 aa7.09□□□□□ -1.27
CD44-231ENST00000531110 CHRNA2Q15822 529 aa7.09□□□□□ -1.27
CD44-231ENST00000531110 LBX2Q6XYB7 198 aa7.09□□□□□ -1.27
CD44-231ENST00000531110 NLRP10Q86W26 655 aa7.09□□□□□ -1.27
CD44-231ENST00000531110 CNPY4Q8N129 248 aa7.09□□□□□ -1.27
CD44-231ENST00000531110 DIRC2Q96SL1 478 aa7.09□□□□□ -1.27
CD44-231ENST00000531110 MRPL4Q9BYD3 311 aaKnown RBP7.09□□□□□ -1.27
CD44-231ENST00000531110 YY1AP1Q9H869 796 aa7.09□□□□□ -1.27
CD44-231ENST00000531110 MARCH2Q9P0N8 246 aa7.09□□□□□ -1.27
CD44-231ENST00000531110 NISCHQ9Y2I1 1504 aa7.08□□□□□ -1.28
CD44-231ENST00000531110 C22orf46C9J442 243 aa7.08□□□□□ -1.28
CD44-231ENST00000531110 WNT9AO14904 365 aa7.08□□□□□ -1.28
CD44-231ENST00000531110 IGSF3O75054 1194 aa7.08□□□□□ -1.28
CD44-231ENST00000531110 FUCA1P04066 466 aa7.08□□□□□ -1.28
CD44-231ENST00000531110 LCP1P13796 627 aa7.08□□□□□ -1.28
CD44-231ENST00000531110 BCL6P41182 706 aa7.08□□□□□ -1.28
CD44-231ENST00000531110 PLEKHN1Q494U1 663 aaPredicted RBP7.08□□□□□ -1.28
CD44-231ENST00000531110 ZC3H14Q6PJT7 736 aaKnown RBP7.08□□□□□ -1.28
CD44-231ENST00000531110 ZNF605Q86T29 641 aa7.08□□□□□ -1.28
CD44-231ENST00000531110 USP33Q8TEY7 942 aa7.08□□□□□ -1.28
CD44-231ENST00000531110 SH3TC2Q8TF17 1288 aa7.08□□□□□ -1.28
CD44-231ENST00000531110 CDIP1Q9H305 208 aa7.08□□□□□ -1.28
CD44-231ENST00000531110 FBLN5Q9UBX5 448 aa7.08□□□□□ -1.28
CD44-231ENST00000531110 COA3Q9Y2R0 106 aaPredicted RBP7.08□□□□□ -1.28
CD44-231ENST00000531110 PCDHA2Q9Y5H9 948 aa7.08□□□□□ -1.28
CD44-231ENST00000531110 MYOCOSA0A1B0GUC4 107 aa7.07□□□□□ -1.28
CD44-231ENST00000531110 NUDT19A8MXV4 375 aa7.07□□□□□ -1.28
CD44-231ENST00000531110 TSPAN15O95858 294 aa7.07□□□□□ -1.28
CD44-231ENST00000531110 TACR1P25103 407 aa7.07□□□□□ -1.28
CD44-231ENST00000531110 VIPR1P32241 457 aa7.07□□□□□ -1.28
CD44-231ENST00000531110 FAM193AP78312 1265 aa7.07□□□□□ -1.28
CD44-231ENST00000531110 EMC4Q5J8M3 183 aa7.07□□□□□ -1.28
CD44-231ENST00000531110 CYP4F22Q6NT55 531 aa7.07□□□□□ -1.28
CD44-231ENST00000531110 CEP68Q76N32 757 aa7.07□□□□□ -1.28
CD44-231ENST00000531110 GSTCDQ8NEC7 633 aa7.07□□□□□ -1.28
CD44-231ENST00000531110 SEC14L1Q92503 715 aa7.07□□□□□ -1.28
CD44-231ENST00000531110 TRMT2BQ96GJ1 504 aaKnown RBP7.07□□□□□ -1.28
CD44-231ENST00000531110 SLC38A3Q99624 504 aa7.07□□□□□ -1.28
CD44-231ENST00000531110 MCOLN1Q9GZU1 580 aa7.07□□□□□ -1.28
CD44-231ENST00000531110 EPB41L1Q9H4G0 881 aa7.07□□□□□ -1.28
CD44-231ENST00000531110 IRS2Q9Y4H2 1338 aa7.06□□□□□ -1.28
CD44-231ENST00000531110 PLD2O14939 933 aa7.06□□□□□ -1.28
CD44-231ENST00000531110 SQSTM1Q13501 440 aa7.06□□□□□ -1.28
CD44-231ENST00000531110 RNPC3Q96LT9 517 aaKnown RBP7.06□□□□□ -1.28
CD44-231ENST00000531110 ALG1Q9BT22 464 aa7.06□□□□□ -1.28
CD44-231ENST00000531110 RNF38Q9H0F5 515 aa7.06□□□□□ -1.28
CD44-231ENST00000531110 AP5M1Q9H0R1 490 aa7.06□□□□□ -1.28
CD44-231ENST00000531110 F8W031 263 aaPredicted RBP7.05□□□□□ -1.28
CD44-231ENST00000531110 NTRK1P04629 796 aa7.05□□□□□ -1.28
CD44-231ENST00000531110 FPR2P25090 351 aa7.05□□□□□ -1.28
CD44-231ENST00000531110 IRX3P78415 501 aaPredicted RBP7.05□□□□□ -1.28
CD44-231ENST00000531110 SRSF3P84103 164 aaKnown RBP7.05□□□□□ -1.28
CD44-231ENST00000531110 FNDC3BQ53EP0 1204 aaKnown RBP7.05□□□□□ -1.28
CD44-231ENST00000531110 KCNT2Q6UVM3 1135 aa7.05□□□□□ -1.28
CD44-231ENST00000531110 NCOA5Q9HCD5 579 aaKnown RBP7.05□□□□□ -1.28
CD44-231ENST00000531110 SIRT5Q9NXA8 310 aa7.05□□□□□ -1.28
CD44-231ENST00000531110 CLDND1Q9NY35 253 aa7.05□□□□□ -1.28
CD44-231ENST00000531110 MBD1Q9UIS9 605 aaPredicted RBP7.05□□□□□ -1.28
CD44-231ENST00000531110 FBXL7Q9UJT9 491 aa7.05□□□□□ -1.28
CD44-231ENST00000531110 ZNF652Q9Y2D9 606 aa7.05□□□□□ -1.28
CD44-231ENST00000531110 ARVCFO00192 962 aa7.04□□□□□ -1.28
CD44-231ENST00000531110 MAFKO60675 156 aa7.04□□□□□ -1.28
CD44-231ENST00000531110 MSCO60682 206 aa7.04□□□□□ -1.28
CD44-231ENST00000531110 DGKIO75912 1065 aa7.04□□□□□ -1.28
CD44-231ENST00000531110 APPP05067 770 aa7.04□□□□□ -1.28
CD44-231ENST00000531110 SDHBP21912 280 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms