RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 PLEKHG1Q9ULL1 1385 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 GNGT1P63211 74 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 COL9A3Q14050 684 aaPredicted RBP3.87□□□□□ -1.79
SYNE1-201ENST00000341594 LMBR1Q8WVP7 490 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 ACSBG1Q96GR2 724 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 C10orf88Q9H8K7 445 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 PHRF1Q9P1Y6 1649 aaKnown RBP3.87□□□□□ -1.79
SYNE1-201ENST00000341594 SEC24CP53992 1094 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 NUP62CLQ9H1M0 184 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 ZNF148Q9UQR1 794 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 PRAMEF22A3QJZ6 481 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 PASD1Q8IV76 773 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 FOXP3Q9BZS1 431 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 IVNS1ABPQ9Y6Y0 642 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 SMNDC1O75940 238 aaKnown RBP eCLIP3.87□□□□□ -1.79
SYNE1-201ENST00000341594 PMS1P54277 932 aaKnown RBP3.87□□□□□ -1.79
SYNE1-201ENST00000341594 PLEKHM2Q8IWE5 1019 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 MAB21L3Q8N8X9 362 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 EMID1Q96A84 441 aaPredicted RBP3.87□□□□□ -1.79
SYNE1-201ENST00000341594 GMEB1Q9Y692 573 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 SPDYAQ5MJ70 313 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 KDELC2Q7Z4H8 507 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 SMYD3Q9H7B4 428 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 MAGEF1Q9HAY2 307 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 KMT5AQ9NQR1 393 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 NCAPD2Q15021 1401 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 IFNAR2P48551 515 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 UBXN1Q04323 297 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 PICALMQ13492 652 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 TRIM17Q9Y577 477 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 ADGRB3O60242 1522 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 WNT7AO00755 349 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 MSX2P35548 267 aaPredicted RBP3.87□□□□□ -1.79
SYNE1-201ENST00000341594 NNTQ13423 1086 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 ZFAND2BQ8WV99 257 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 CARD14Q9BXL6 1004 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 WDR17Q8IZU2 1322 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 A2ML1A8K2U0 1454 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 PABPN1LA6NDY0 278 aaKnown RBP3.87□□□□□ -1.79
SYNE1-201ENST00000341594 NOL3O60936 208 aaKnown RBP3.87□□□□□ -1.79
SYNE1-201ENST00000341594 GNAI2P04899 355 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 AARSP49588 968 aaKnown RBP eCLIP3.87□□□□□ -1.79
SYNE1-201ENST00000341594 ADRM1Q16186 407 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 CCDC144BQ3MJ40 725 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 MLKLQ8NB16 471 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 TTF2Q9UNY4 1162 aaKnown RBP3.87□□□□□ -1.79
SYNE1-201ENST00000341594 IL1RL1Q01638 556 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 ODR4Q5SWX8 454 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 TSG101Q99816 390 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 CPVLQ9H3G5 476 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 PNPLA6Q8IY17 1366 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 ITGB4P16144 1822 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 VTI1AQ96AJ9 217 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 CARD10Q9BWT7 1032 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 PCSK2P16519 638 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 SP100P23497 879 aaPredicted RBP3.87□□□□□ -1.79
SYNE1-201ENST00000341594 PPARAQ07869 468 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 KPNB1Q14974 876 aaKnown RBP3.87□□□□□ -1.79
SYNE1-201ENST00000341594 OPTNQ96CV9 577 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 STX6O43752 255 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 PNMA6AP0CW24 399 aaPredicted RBP3.87□□□□□ -1.79
SYNE1-201ENST00000341594 CLSTN2Q9H4D0 955 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 MRPL40Q9NQ50 206 aaKnown RBP3.87□□□□□ -1.79
SYNE1-201ENST00000341594 VPS45Q9NRW7 570 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 CEP131Q9UPN4 1083 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 CACNA1IQ9P0X4 2223 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 NR1I2O75469 434 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 FNTAP49354 379 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 SPIDRQ14159 915 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 RSPH3Q86UC2 560 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 SLC4A11Q8NBS3 891 aa3.87□□□□□ -1.79
SYNE1-201ENST00000341594 AATKQ6ZMQ8 1374 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 F7P08709 466 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-201ENST00000341594 EHD2Q9NZN4 543 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 SFMBT1Q9UHJ3 866 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 H0Y3Z8 333 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 GSTA1P08263 222 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 ARPP19P56211 112 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 DLC1Q96QB1 1528 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 ZNF189O75820 626 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-201ENST00000341594 PSMA4P25789 261 aaKnown RBP3.86□□□□□ -1.79
SYNE1-201ENST00000341594 TTC22Q5TAA0 569 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 LINC00299Q6ZSB3 139 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 CDK19Q9BWU1 502 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 PXDNLA1KZ92 1463 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 UBE2Q1Q7Z7E8 422 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 ZNF395Q9H8N7 513 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-201ENST00000341594 TFCP2L1Q9NZI6 479 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 BCAP29Q9UHQ4 241 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 ATP8B3O60423 1300 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 USP19O94966 1318 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 PLXNA3P51805 1871 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 EPB41P11171 864 aaKnown RBP3.86□□□□□ -1.79
SYNE1-201ENST00000341594 IDO1P14902 403 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 WDR75Q8IWA0 830 aaKnown RBP3.86□□□□□ -1.79
SYNE1-201ENST00000341594 PIK3C2BO00750 1634 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 ZBBXA8MT70 800 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 POC1B-GALNT4F8VUJ3 575 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 VAV2P52735 878 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 KCTD2Q14681 263 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms