RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 DHX16O60231 1041 aaKnown RBP20.27■□□□□ 0.84
SMG6-214ENST00000573827 TIMP1P01033 207 aa20.27■□□□□ 0.84
SMG6-214ENST00000573827 Q7L0L9 218 aa20.27■□□□□ 0.84
SMG6-214ENST00000573827 NSUN6Q8TEA1 469 aaKnown RBP20.27■□□□□ 0.84
SMG6-214ENST00000573827 SCFD2Q8WU76 684 aa20.27■□□□□ 0.84
SMG6-214ENST00000573827 CHD7Q9P2D1 2997 aa20.27■□□□□ 0.83
SMG6-214ENST00000573827 UNC80Q8N2C7 3258 aa20.26■□□□□ 0.83
SMG6-214ENST00000573827 A6NJR5 290 aa20.26■□□□□ 0.83
SMG6-214ENST00000573827 SH2B2O14492 632 aaPredicted RBP20.26■□□□□ 0.83
SMG6-214ENST00000573827 RAG1P15918 1043 aa20.26■□□□□ 0.83
SMG6-214ENST00000573827 PSMC6P62333 389 aa20.26■□□□□ 0.83
SMG6-214ENST00000573827 PURAQ00577 322 aaKnown RBP20.26■□□□□ 0.83
SMG6-214ENST00000573827 ITGA7Q13683 1181 aa20.26■□□□□ 0.83
SMG6-214ENST00000573827 SART3Q15020 963 aaKnown RBP20.26■□□□□ 0.83
SMG6-214ENST00000573827 C16orf59Q7L2K0 433 aa20.26■□□□□ 0.83
SMG6-214ENST00000573827 IWS1Q96ST2 819 aa20.26■□□□□ 0.83
SMG6-214ENST00000573827 RMDN3Q96TC7 470 aa20.26■□□□□ 0.83
SMG6-214ENST00000573827 MAP3K14Q99558 947 aa20.26■□□□□ 0.83
SMG6-214ENST00000573827 PCDHA1Q9Y5I3 950 aa20.26■□□□□ 0.83
SMG6-214ENST00000573827 ERICH2A1L162 156 aa20.25■□□□□ 0.83
SMG6-214ENST00000573827 NKRFO15226 690 aaKnown RBP eCLIP20.25■□□□□ 0.83
SMG6-214ENST00000573827 PRC1O43663 620 aa20.25■□□□□ 0.83
SMG6-214ENST00000573827 PPP2R5BQ15173 497 aa20.25■□□□□ 0.83
SMG6-214ENST00000573827 MFSD5Q6N075 450 aa20.25■□□□□ 0.83
SMG6-214ENST00000573827 VTI1AQ96AJ9 217 aa20.25■□□□□ 0.83
SMG6-214ENST00000573827 PXMP2Q9NR77 195 aa20.25■□□□□ 0.83
SMG6-214ENST00000573827 KIAA1217Q5T5P2 1943 aa20.24■□□□□ 0.83
SMG6-214ENST00000573827 ZEB2O60315 1214 aa20.24■□□□□ 0.83
SMG6-214ENST00000573827 RGS20O76081 388 aa20.24■□□□□ 0.83
SMG6-214ENST00000573827 DDAH1O94760 285 aa20.24■□□□□ 0.83
SMG6-214ENST00000573827 TXNP10599 105 aaKnown RBP20.24■□□□□ 0.83
SMG6-214ENST00000573827 FPGSQ05932 587 aa20.24■□□□□ 0.83
SMG6-214ENST00000573827 CATIPQ7Z7H3 387 aa20.24■□□□□ 0.83
SMG6-214ENST00000573827 ZNF654Q8IZM8 581 aa20.24■□□□□ 0.83
SMG6-214ENST00000573827 DEFB123Q8N688 67 aa20.24■□□□□ 0.83
SMG6-214ENST00000573827 OR6J1Q8NGC5 347 aa20.24■□□□□ 0.83
SMG6-214ENST00000573827 VWCEQ96DN2 955 aa20.24■□□□□ 0.83
SMG6-214ENST00000573827 MPHOSPH6Q99547 160 aaKnown RBP20.24■□□□□ 0.83
SMG6-214ENST00000573827 MYL10Q9BUA6 226 aa20.24■□□□□ 0.83
SMG6-214ENST00000573827 SEZ6LQ9BYH1 1024 aa20.24■□□□□ 0.83
SMG6-214ENST00000573827 TRPV6Q9H1D0 765 aa20.24■□□□□ 0.83
SMG6-214ENST00000573827 ANO2Q9NQ90 1003 aa20.24■□□□□ 0.83
SMG6-214ENST00000573827 MTMR10Q9NXD2 777 aa20.24■□□□□ 0.83
SMG6-214ENST00000573827 MAP3K20Q9NYL2 800 aaKnown RBP20.24■□□□□ 0.83
SMG6-214ENST00000573827 PNMA6FA0A0J9YX94 578 aa20.23■□□□□ 0.83
SMG6-214ENST00000573827 CFBP00751 764 aa20.23■□□□□ 0.83
SMG6-214ENST00000573827 NR3C2P08235 984 aa20.23■□□□□ 0.83
SMG6-214ENST00000573827 EIF2AK2P19525 551 aaKnown RBP20.23■□□□□ 0.83
SMG6-214ENST00000573827 MCM5P33992 734 aa20.23■□□□□ 0.83
SMG6-214ENST00000573827 CPT1AP50416 773 aa20.23■□□□□ 0.83
SMG6-214ENST00000573827 ARHGAP1Q07960 439 aa20.23■□□□□ 0.83
SMG6-214ENST00000573827 TTLL4Q14679 1199 aa20.23■□□□□ 0.83
SMG6-214ENST00000573827 FAM109BQ6ICB4 259 aaPredicted RBP20.23■□□□□ 0.83
SMG6-214ENST00000573827 HOMER1Q86YM7 354 aa20.23■□□□□ 0.83
SMG6-214ENST00000573827 IL31RAQ8NI17 732 aa20.23■□□□□ 0.83
SMG6-214ENST00000573827 PDCD2LQ9BRP1 358 aa20.23■□□□□ 0.83
SMG6-214ENST00000573827 SPZ1Q9BXG8 430 aa20.23■□□□□ 0.83
SMG6-214ENST00000573827 UMODL1Q5DID0 1318 aa20.23■□□□□ 0.83
SMG6-214ENST00000573827 B4DLN1 442 aa20.22■□□□□ 0.83
SMG6-214ENST00000573827 B4GALT4O60513 344 aa20.22■□□□□ 0.83
SMG6-214ENST00000573827 HOXA13P31271 388 aaPredicted RBP20.22■□□□□ 0.83
SMG6-214ENST00000573827 LIFRP42702 1097 aa20.22■□□□□ 0.83
SMG6-214ENST00000573827 MRPL12P52815 198 aaKnown RBP20.22■□□□□ 0.83
SMG6-214ENST00000573827 STXBP2Q15833 593 aa20.22■□□□□ 0.83
SMG6-214ENST00000573827 RASIP1Q5U651 963 aa20.22■□□□□ 0.83
SMG6-214ENST00000573827 RASEFQ8IZ41 740 aa20.22■□□□□ 0.83
SMG6-214ENST00000573827 SAMD3Q8N6K7 520 aa20.22■□□□□ 0.83
SMG6-214ENST00000573827 TMEM87BQ96K49 555 aa20.22■□□□□ 0.83
SMG6-214ENST00000573827 NOC4LQ9BVI4 516 aaKnown RBP20.22■□□□□ 0.83
SMG6-214ENST00000573827 ALDH8A1Q9H2A2 487 aaPredicted RBP20.22■□□□□ 0.83
SMG6-214ENST00000573827 POLR3EQ9NVU0 708 aa20.22■□□□□ 0.83
SMG6-214ENST00000573827 DDX41Q9UJV9 622 aaKnown RBP20.22■□□□□ 0.83
SMG6-214ENST00000573827 EIF3JO75822 258 aaKnown RBP20.21■□□□□ 0.83
SMG6-214ENST00000573827 SMARCA1P28370 1054 aa20.21■□□□□ 0.83
SMG6-214ENST00000573827 LY6KQ17RY6 165 aa20.21■□□□□ 0.83
SMG6-214ENST00000573827 TSGA10IPQ3SY00 556 aa20.21■□□□□ 0.83
SMG6-214ENST00000573827 ARHGEF16Q5VV41 709 aa20.21■□□□□ 0.83
SMG6-214ENST00000573827 SEPT14Q6ZU15 432 aa20.21■□□□□ 0.83
SMG6-214ENST00000573827 VSIG10LQ86VR7 867 aa20.21■□□□□ 0.83
SMG6-214ENST00000573827 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.21■□□□□ 0.83
SMG6-214ENST00000573827 MTG1Q9BT17 334 aaPredicted RBP20.21■□□□□ 0.83
SMG6-214ENST00000573827 FRMPD4Q14CM0 1322 aa20.21■□□□□ 0.83
SMG6-214ENST00000573827 TLR3O15455 904 aaKnown RBP20.2■□□□□ 0.82
SMG6-214ENST00000573827 PLEKHA8P1O95397 391 aa20.2■□□□□ 0.82
SMG6-214ENST00000573827 MYL3P08590 195 aa20.2■□□□□ 0.82
SMG6-214ENST00000573827 CSF2RAP15509 400 aa20.2■□□□□ 0.82
SMG6-214ENST00000573827 CYP2C18P33260 490 aa20.2■□□□□ 0.82
SMG6-214ENST00000573827 EXOSC10Q01780 885 aaKnown RBP20.2■□□□□ 0.82
SMG6-214ENST00000573827 CASC1Q6TDU7 716 aa20.2■□□□□ 0.82
SMG6-214ENST00000573827 SGMS1Q86VZ5 419 aa20.2■□□□□ 0.82
SMG6-214ENST00000573827 SRBD1Q8N5C6 995 aaKnown RBP20.2■□□□□ 0.82
SMG6-214ENST00000573827 EMID1Q96A84 441 aaPredicted RBP20.2■□□□□ 0.82
SMG6-214ENST00000573827 LRRC2Q9BYS8 371 aa20.2■□□□□ 0.82
SMG6-214ENST00000573827 PPP1R12CQ9BZL4 782 aa20.2■□□□□ 0.82
SMG6-214ENST00000573827 WNT8AQ9H1J5 351 aa20.2■□□□□ 0.82
SMG6-214ENST00000573827 TRMT13Q9NUP7 481 aaKnown RBP20.2■□□□□ 0.82
SMG6-214ENST00000573827 CDC45O75419 566 aa20.19■□□□□ 0.82
SMG6-214ENST00000573827 SMAD3P84022 425 aaKnown RBP20.19■□□□□ 0.82
SMG6-214ENST00000573827 PGM5Q15124 567 aa20.19■□□□□ 0.82
SMG6-214ENST00000573827 NBPF20Q3BBV1 942 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms