RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 HS6ST3Q8IZP7 471 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 PNMA5Q96PV4 448 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 PSMB7Q99436 277 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 C7orf25Q9BPX7 421 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 SPZ1Q9BXG8 430 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 SMARCAL1Q9NZC9 954 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 EHD2Q9NZN4 543 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 ARHGAP20Q9P2F6 1191 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 FOCADQ5VW36 1801 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 EIF3CLB5ME19 914 aaKnown RBP8.36□□□□□ -1.07
LIMA1-213ENST00000552720 KRT86O43790 486 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 MYL1P05976 194 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 SLURP2P0DP57 97 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 CYLC1P35663 651 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-213ENST00000552720 PPP4CP60510 307 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 KRT83P78385 493 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 GALNT17Q6IS24 598 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 C2CD5Q86YS7 1000 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 TEX11Q8IYF3 940 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 LRRC47Q8N1G4 583 aaKnown RBP8.36□□□□□ -1.07
LIMA1-213ENST00000552720 HDAC7Q8WUI4 952 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 EIF3CQ99613 913 aaKnown RBP8.36□□□□□ -1.07
LIMA1-213ENST00000552720 C6orf50Q9HD87 102 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 JADE2Q9NQC1 790 aa8.36□□□□□ -1.07
LIMA1-213ENST00000552720 BICDL2A1A5D9 508 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 EIF3JO75822 258 aaKnown RBP8.35□□□□□ -1.07
LIMA1-213ENST00000552720 MOCS3O95396 460 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 SYF2O95926 243 aaKnown RBP8.35□□□□□ -1.07
LIMA1-213ENST00000552720 CXCR5P32302 372 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 DSG3P32926 999 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 GPSM2P81274 684 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 CCDC96Q2M329 555 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 C16orf86Q6ZW13 317 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 ZSCAN29Q8IWY8 852 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-213ENST00000552720 REXO1Q8N1G1 1221 aaKnown RBP8.35□□□□□ -1.07
LIMA1-213ENST00000552720 ANKRD13CQ8N6S4 541 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 NEDD1Q8NHV4 660 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 CAGE1Q8TC20 777 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 NOC3LQ8WTT2 800 aaKnown RBP8.35□□□□□ -1.07
LIMA1-213ENST00000552720 COG1Q8WTW3 980 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 RRP36Q96EU6 259 aaKnown RBP8.35□□□□□ -1.07
LIMA1-213ENST00000552720 AK8Q96MA6 479 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 PLEKHA4Q9H4M7 779 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 ZNHIT6Q9NWK9 470 aaKnown RBP8.35□□□□□ -1.07
LIMA1-213ENST00000552720 NHSQ6T4R5 1651 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 ADAMTSL1Q8N6G6 1762 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 ZC3H4Q9UPT8 1303 aaKnown RBP8.35□□□□□ -1.07
LIMA1-213ENST00000552720 TULP2O00295 520 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 VAV2P52735 878 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 GRAPQ13588 217 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 ECM1Q16610 540 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 VWA3BQ502W6 1294 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 SOGA3Q5TF21 947 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 CENPPQ6IPU0 288 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 GRAPLQ8TC17 118 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-213ENST00000552720 CALML4Q96GE6 196 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 CCDC42Q96M95 316 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 MTMR9Q96QG7 549 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 PURBQ96QR8 312 aaKnown RBP8.35□□□□□ -1.07
LIMA1-213ENST00000552720 ERGIC2Q96RQ1 377 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 NUP58Q9BVL2 599 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 NDST4Q9H3R1 872 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 CUEDC2Q9H467 287 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 MMRN2Q9H8L6 949 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 FAM204AQ9H8W3 233 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 KANSL2Q9H9L4 492 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 CD209Q9NNX6 404 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 PSD3Q9NYI0 1048 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 SEC63Q9UGP8 760 aaKnown RBP8.35□□□□□ -1.07
LIMA1-213ENST00000552720 SALL4Q9UJQ4 1053 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 CCNL1Q9UK58 526 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-213ENST00000552720 SIK3Q9Y2K2 1263 aa8.35□□□□□ -1.07
LIMA1-213ENST00000552720 RTCBQ9Y3I0 505 aaKnown RBP8.35□□□□□ -1.07
LIMA1-213ENST00000552720 LRRC53A6NM62 1247 aa8.34□□□□□ -1.07
LIMA1-213ENST00000552720 NCK2O43639 380 aa8.34□□□□□ -1.07
LIMA1-213ENST00000552720 UFL1O94874 794 aa8.34□□□□□ -1.07
LIMA1-213ENST00000552720 IPO7O95373 1038 aaKnown RBP8.34□□□□□ -1.07
LIMA1-213ENST00000552720 GNA11P29992 359 aa8.34□□□□□ -1.07
LIMA1-213ENST00000552720 ACTN2P35609 894 aa8.34□□□□□ -1.07
LIMA1-213ENST00000552720 EIF4A3P38919 411 aaKnown RBP8.34□□□□□ -1.07
LIMA1-213ENST00000552720 MATR3P43243 847 aaKnown RBP eCLIP8.34□□□□□ -1.07
LIMA1-213ENST00000552720 KIF11P52732 1056 aa8.34□□□□□ -1.07
LIMA1-213ENST00000552720 RHBDL3P58872 404 aa8.34□□□□□ -1.07
LIMA1-213ENST00000552720 GSTO1P78417 241 aa8.34□□□□□ -1.07
LIMA1-213ENST00000552720 APBA1Q02410 837 aa8.34□□□□□ -1.07
LIMA1-213ENST00000552720 KIF5AQ12840 1032 aa8.34□□□□□ -1.07
LIMA1-213ENST00000552720 PICALMQ13492 652 aa8.34□□□□□ -1.07
LIMA1-213ENST00000552720 CALCRLQ16602 461 aa8.34□□□□□ -1.07
LIMA1-213ENST00000552720 UBE2SQ16763 222 aa8.34□□□□□ -1.07
LIMA1-213ENST00000552720 MUM1L1Q5H9M0 696 aa8.34□□□□□ -1.07
LIMA1-213ENST00000552720 CNNM4Q6P4Q7 775 aa8.34□□□□□ -1.07
LIMA1-213ENST00000552720 SV2BQ7L1I2 683 aa8.34□□□□□ -1.07
LIMA1-213ENST00000552720 ZNF804AQ7Z570 1209 aa8.34□□□□□ -1.07
LIMA1-213ENST00000552720 SECISBP2LQ93073 1101 aaKnown RBP8.34□□□□□ -1.07
LIMA1-213ENST00000552720 CCDC47Q96A33 483 aaKnown RBP8.34□□□□□ -1.07
LIMA1-213ENST00000552720 FGFBP2Q9BYJ0 223 aa8.34□□□□□ -1.07
LIMA1-213ENST00000552720 GBP3Q9H0R5 595 aa8.34□□□□□ -1.07
LIMA1-213ENST00000552720 GPCPD1Q9NPB8 672 aa8.34□□□□□ -1.07
LIMA1-213ENST00000552720 HPCAL4Q9UM19 191 aa8.34□□□□□ -1.07
LIMA1-213ENST00000552720 TRIM66O15016 1216 aa8.34□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms