RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 FBXO11Q86XK2 927 aa17.02■□□□□ 0.32
PNKP-221ENST00000627317 MTMR8Q96EF0 704 aa17.02■□□□□ 0.32
PNKP-221ENST00000627317 RNF146Q9NTX7 359 aa17.02■□□□□ 0.32
PNKP-221ENST00000627317 SLC5A4Q9NY91 659 aa17.02■□□□□ 0.32
PNKP-221ENST00000627317 DDX20Q9UHI6 824 aaKnown RBP17.02■□□□□ 0.32
PNKP-221ENST00000627317 FRMPD3Q5JV73 1810 aa17.02■□□□□ 0.31
PNKP-221ENST00000627317 PFASO15067 1338 aa17.01■□□□□ 0.31
PNKP-221ENST00000627317 PNMA6FA0A0J9YX94 578 aa17.01■□□□□ 0.31
PNKP-221ENST00000627317 LARGE1O95461 756 aa17.01■□□□□ 0.31
PNKP-221ENST00000627317 TAL1P17542 331 aaPredicted RBP17.01■□□□□ 0.31
PNKP-221ENST00000627317 TRAF1Q13077 416 aa17.01■□□□□ 0.31
PNKP-221ENST00000627317 ME3Q16798 604 aa17.01■□□□□ 0.31
PNKP-221ENST00000627317 CHST13Q8NET6 341 aa17.01■□□□□ 0.31
PNKP-221ENST00000627317 FBXO40Q9UH90 709 aa17.01■□□□□ 0.31
PNKP-221ENST00000627317 DNAH12Q6ZR08 3092 aa17■□□□□ 0.31
PNKP-221ENST00000627317 MCM2P49736 904 aa17■□□□□ 0.31
PNKP-221ENST00000627317 AKAP17AQ02040 695 aaKnown RBP17■□□□□ 0.31
PNKP-221ENST00000627317 FUT2Q10981 343 aa17■□□□□ 0.31
PNKP-221ENST00000627317 SCRN1Q12765 414 aa17■□□□□ 0.31
PNKP-221ENST00000627317 NECAB2Q7Z6G3 386 aa17■□□□□ 0.31
PNKP-221ENST00000627317 NECAB1Q8N987 351 aa17■□□□□ 0.31
PNKP-221ENST00000627317 GTF3C6Q969F1 213 aa17■□□□□ 0.31
PNKP-221ENST00000627317 ZSCAN31Q96LW9 406 aaPredicted RBP17■□□□□ 0.31
PNKP-221ENST00000627317 TRERF1Q96PN7 1200 aa17■□□□□ 0.31
PNKP-221ENST00000627317 TINF2Q9BSI4 451 aa17■□□□□ 0.31
PNKP-221ENST00000627317 HTATIP2Q9BUP3 242 aa17■□□□□ 0.31
PNKP-221ENST00000627317 AMNQ9BXJ7 453 aa17■□□□□ 0.31
PNKP-221ENST00000627317 ACAD9Q9H845 621 aa17■□□□□ 0.31
PNKP-221ENST00000627317 SH2B1Q9NRF2 756 aaPredicted RBP17■□□□□ 0.31
PNKP-221ENST00000627317 NRBP1Q9UHY1 535 aa17■□□□□ 0.31
PNKP-221ENST00000627317 ABCB11O95342 1321 aa16.99■□□□□ 0.31
PNKP-221ENST00000627317 hCG_1642624A0A1W2PR95 340 aa16.99■□□□□ 0.31
PNKP-221ENST00000627317 H0YGN5 161 aa16.99■□□□□ 0.31
PNKP-221ENST00000627317 SEPT4O43236 478 aa16.99■□□□□ 0.31
PNKP-221ENST00000627317 MSCO60682 206 aa16.99■□□□□ 0.31
PNKP-221ENST00000627317 CDKL5O76039 1030 aa16.99■□□□□ 0.31
PNKP-221ENST00000627317 IFNAR1P17181 557 aa16.99■□□□□ 0.31
PNKP-221ENST00000627317 PRAMEF19Q5SWL8 479 aa16.99■□□□□ 0.31
PNKP-221ENST00000627317 MAMDC4Q6UXC1 1216 aa16.99■□□□□ 0.31
PNKP-221ENST00000627317 ZNF467Q7Z7K2 595 aaPredicted RBP16.99■□□□□ 0.31
PNKP-221ENST00000627317 TRIM22Q8IYM9 498 aa16.99■□□□□ 0.31
PNKP-221ENST00000627317 MSL3Q8N5Y2 521 aaKnown RBP16.99■□□□□ 0.31
PNKP-221ENST00000627317 PHKBQ93100 1093 aa16.99■□□□□ 0.31
PNKP-221ENST00000627317 RBM27Q9P2N5 1060 aaKnown RBP16.99■□□□□ 0.31
PNKP-221ENST00000627317 SYNGAP1Q96PV0 1343 aa16.98■□□□□ 0.31
PNKP-221ENST00000627317 PPP1R11O60927 126 aaPredicted RBP16.98■□□□□ 0.31
PNKP-221ENST00000627317 NTRK3Q16288 839 aa16.98■□□□□ 0.31
PNKP-221ENST00000627317 HEATR3Q7Z4Q2 680 aa16.98■□□□□ 0.31
PNKP-221ENST00000627317 SLC26A6Q9BXS9 759 aa16.98■□□□□ 0.31
PNKP-221ENST00000627317 C11orf49Q9H6J7 331 aa16.98■□□□□ 0.31
PNKP-221ENST00000627317 A1CFQ9NQ94 594 aaKnown RBP16.98■□□□□ 0.31
PNKP-221ENST00000627317 MRPL11Q9Y3B7 192 aaKnown RBP16.98■□□□□ 0.31
PNKP-221ENST00000627317 PCDHA1Q9Y5I3 950 aa16.98■□□□□ 0.31
PNKP-221ENST00000627317 V9GY48 417 aaPredicted RBP16.98■□□□□ 0.31
PNKP-221ENST00000627317 ALPK3Q96L96 1907 aa16.98■□□□□ 0.31
PNKP-221ENST00000627317 ASTN1O14525 1302 aa16.97■□□□□ 0.31
PNKP-221ENST00000627317 PPFIA3O75145 1194 aa16.97■□□□□ 0.31
PNKP-221ENST00000627317 CD2BP2O95400 341 aaKnown RBP16.97■□□□□ 0.31
PNKP-221ENST00000627317 SNAI1O95863 264 aaPredicted RBP16.97■□□□□ 0.31
PNKP-221ENST00000627317 ZNF865P0CJ78 1059 aaPredicted RBP16.97■□□□□ 0.31
PNKP-221ENST00000627317 SSRP1Q08945 709 aaKnown RBP16.97■□□□□ 0.31
PNKP-221ENST00000627317 MUM1L1Q5H9M0 696 aa16.97■□□□□ 0.31
PNKP-221ENST00000627317 FAM133AQ8N9E0 248 aa16.97■□□□□ 0.31
PNKP-221ENST00000627317 RNF26Q9BY78 433 aaPredicted RBP16.97■□□□□ 0.31
PNKP-221ENST00000627317 PLXNA1Q9UIW2 1896 aa16.97■□□□□ 0.31
PNKP-221ENST00000627317 NFIBO00712 420 aa16.96■□□□□ 0.31
PNKP-221ENST00000627317 CNGA1P29973 690 aa16.96■□□□□ 0.31
PNKP-221ENST00000627317 NSMFQ6X4W1 530 aa16.96■□□□□ 0.31
PNKP-221ENST00000627317 CCDC83Q8IWF9 413 aa16.96■□□□□ 0.31
PNKP-221ENST00000627317 ANKRD35Q8N283 1001 aa16.96■□□□□ 0.31
PNKP-221ENST00000627317 DPF3Q92784 378 aa16.96■□□□□ 0.31
PNKP-221ENST00000627317 DDX11Q96FC9 970 aa16.96■□□□□ 0.31
PNKP-221ENST00000627317 KATNBL1Q9H079 304 aa16.96■□□□□ 0.31
PNKP-221ENST00000627317 hCG_1984214I3L0E3 225 aa16.95■□□□□ 0.3
PNKP-221ENST00000627317 DNM1LO00429 736 aa16.95■□□□□ 0.3
PNKP-221ENST00000627317 PRPF3O43395 683 aaKnown RBP16.95■□□□□ 0.3
PNKP-221ENST00000627317 SCG2P13521 617 aa16.95■□□□□ 0.3
PNKP-221ENST00000627317 CNTN2Q02246 1040 aa16.95■□□□□ 0.3
PNKP-221ENST00000627317 MCF2L2Q86YR7 1114 aa16.95■□□□□ 0.3
PNKP-221ENST00000627317 ZNF713Q8N859 430 aaPredicted RBP16.95■□□□□ 0.3
PNKP-221ENST00000627317 CLEC4DQ8WXI8 215 aa16.95■□□□□ 0.3
PNKP-221ENST00000627317 GPKOWQ92917 476 aaPredicted RBP eCLIP16.95■□□□□ 0.3
PNKP-221ENST00000627317 PRO3102Q9H379 93 aa16.95■□□□□ 0.3
PNKP-221ENST00000627317 SMCHD1A6NHR9 2005 aa16.95■□□□□ 0.3
PNKP-221ENST00000627317 STK36Q9NRP7 1315 aa16.95■□□□□ 0.3
PNKP-221ENST00000627317 ZNFX1Q9P2E3 1918 aaKnown RBP16.94■□□□□ 0.3
PNKP-221ENST00000627317 LRRC37A2A6NM11 1700 aa16.94■□□□□ 0.3
PNKP-221ENST00000627317 PTPDC1A2A3K4 754 aa16.94■□□□□ 0.3
PNKP-221ENST00000627317 SOWAHBA6NEL2 793 aa16.94■□□□□ 0.3
PNKP-221ENST00000627317 NAPAP54920 295 aa16.94■□□□□ 0.3
PNKP-221ENST00000627317 PFKFB3Q16875 520 aaPredicted RBP16.94■□□□□ 0.3
PNKP-221ENST00000627317 ANO1Q5XXA6 986 aa16.94■□□□□ 0.3
PNKP-221ENST00000627317 WWC2Q6AWC2 1192 aa16.94■□□□□ 0.3
PNKP-221ENST00000627317 TMX3Q96JJ7 454 aa16.94■□□□□ 0.3
PNKP-221ENST00000627317 CYP39A1Q9NYL5 469 aa16.94■□□□□ 0.3
PNKP-221ENST00000627317 ADCY6O43306 1168 aa16.93■□□□□ 0.3
PNKP-221ENST00000627317 DEXIO95424 95 aa16.93■□□□□ 0.3
PNKP-221ENST00000627317 CTDNEP1O95476 244 aa16.93■□□□□ 0.3
PNKP-221ENST00000627317 ST3GAL1Q11201 340 aa16.93■□□□□ 0.3
PNKP-221ENST00000627317 LRRC26Q2I0M4 334 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms