RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 MYLIPQ8WY64 445 aa23.82■■□□□ 1.4
VPS53-210ENST00000571456 AMNQ9BXJ7 453 aa23.82■■□□□ 1.4
VPS53-210ENST00000571456 PORCNQ9H237 461 aa23.82■■□□□ 1.4
VPS53-210ENST00000571456 SLC15A5A6NIM6 579 aa23.81■■□□□ 1.4
VPS53-210ENST00000571456 XRCC5P13010 732 aaKnown RBP23.81■■□□□ 1.4
VPS53-210ENST00000571456 RXRAP19793 462 aa23.81■■□□□ 1.4
VPS53-210ENST00000571456 LHX8Q68G74 356 aa23.81■■□□□ 1.4
VPS53-210ENST00000571456 CCDC174Q6PII3 467 aa23.81■■□□□ 1.4
VPS53-210ENST00000571456 FBXO11Q86XK2 927 aa23.81■■□□□ 1.4
VPS53-210ENST00000571456 SAMD3Q8N6K7 520 aa23.81■■□□□ 1.4
VPS53-210ENST00000571456 ZSCAN31Q96LW9 406 aaPredicted RBP23.81■■□□□ 1.4
VPS53-210ENST00000571456 NUDT12Q9BQG2 462 aa23.81■■□□□ 1.4
VPS53-210ENST00000571456 ACAD9Q9H845 621 aa23.81■■□□□ 1.4
VPS53-210ENST00000571456 SLC5A4Q9NY91 659 aa23.81■■□□□ 1.4
VPS53-210ENST00000571456 FRMPD3Q5JV73 1810 aa23.81■■□□□ 1.4
VPS53-210ENST00000571456 ABCB11O95342 1321 aa23.81■■□□□ 1.4
VPS53-210ENST00000571456 LTBP2Q14767 1821 aa23.8■■□□□ 1.4
VPS53-210ENST00000571456 hCG_1984214I3L0E3 225 aa23.8■■□□□ 1.4
VPS53-210ENST00000571456 TNFRSF10AO00220 468 aa23.8■■□□□ 1.4
VPS53-210ENST00000571456 CYTH3O43739 400 aa23.8■■□□□ 1.4
VPS53-210ENST00000571456 CDKL5O76039 1030 aa23.8■■□□□ 1.4
VPS53-210ENST00000571456 FCER1AP12319 257 aa23.8■■□□□ 1.4
VPS53-210ENST00000571456 PTPREP23469 700 aa23.8■■□□□ 1.4
VPS53-210ENST00000571456 CACNB2Q08289 660 aaPredicted RBP23.8■■□□□ 1.4
VPS53-210ENST00000571456 KCTD2Q14681 263 aa23.8■■□□□ 1.4
VPS53-210ENST00000571456 QRICH1Q2TAL8 776 aa23.8■■□□□ 1.4
VPS53-210ENST00000571456 TEX2Q8IWB9 1127 aa23.8■■□□□ 1.4
VPS53-210ENST00000571456 CCDC144CPQ8IYA2 1237 aa23.8■■□□□ 1.4
VPS53-210ENST00000571456 SRBD1Q8N5C6 995 aaKnown RBP23.8■■□□□ 1.4
VPS53-210ENST00000571456 ZNF713Q8N859 430 aaPredicted RBP23.8■■□□□ 1.4
VPS53-210ENST00000571456 SLKQ9H2G2 1235 aaPredicted RBP23.8■■□□□ 1.4
VPS53-210ENST00000571456 VAT1LQ9HCJ6 419 aa23.8■■□□□ 1.4
VPS53-210ENST00000571456 LIMCH1Q9UPQ0 1083 aa23.8■■□□□ 1.4
VPS53-210ENST00000571456 ZNFX1Q9P2E3 1918 aaKnown RBP23.8■■□□□ 1.4
VPS53-210ENST00000571456 CPLX1O14810 134 aa23.79■■□□□ 1.4
VPS53-210ENST00000571456 PFKFB2O60825 505 aa23.79■■□□□ 1.4
VPS53-210ENST00000571456 FOSL2P15408 326 aa23.79■■□□□ 1.4
VPS53-210ENST00000571456 GRB14Q14449 540 aa23.79■■□□□ 1.4
VPS53-210ENST00000571456 WDR78Q5VTH9 848 aa23.79■■□□□ 1.4
VPS53-210ENST00000571456 TRMT44Q8IYL2 757 aaKnown RBP23.79■■□□□ 1.4
VPS53-210ENST00000571456 RGS22Q8NE09 1264 aa23.79■■□□□ 1.4
VPS53-210ENST00000571456 AGBL1Q96MI9 1066 aa23.79■■□□□ 1.4
VPS53-210ENST00000571456 CPVLQ9H3G5 476 aa23.79■■□□□ 1.4
VPS53-210ENST00000571456 RAPGEFL1Q9UHV5 662 aa23.79■■□□□ 1.4
VPS53-210ENST00000571456 MRPL11Q9Y3B7 192 aaKnown RBP23.79■■□□□ 1.4
VPS53-210ENST00000571456 PLEKHA8P1O95397 391 aa23.78■■□□□ 1.4
VPS53-210ENST00000571456 ALAS1P13196 640 aa23.78■■□□□ 1.4
VPS53-210ENST00000571456 IFNAR1P17181 557 aa23.78■■□□□ 1.4
VPS53-210ENST00000571456 TRERF1Q96PN7 1200 aa23.78■■□□□ 1.4
VPS53-210ENST00000571456 PIGSQ96S52 555 aa23.78■■□□□ 1.4
VPS53-210ENST00000571456 TTYH1Q9H313 450 aaPredicted RBP23.78■■□□□ 1.4
VPS53-210ENST00000571456 SH2B1Q9NRF2 756 aaPredicted RBP23.78■■□□□ 1.4
VPS53-210ENST00000571456 RNF146Q9NTX7 359 aa23.78■■□□□ 1.4
VPS53-210ENST00000571456 FAM217BQ9NTX9 383 aaPredicted RBP23.78■■□□□ 1.4
VPS53-210ENST00000571456 MAP3K20Q9NYL2 800 aaKnown RBP23.78■■□□□ 1.4
VPS53-210ENST00000571456 PRKAG2Q9UGJ0 569 aa23.78■■□□□ 1.4
VPS53-210ENST00000571456 TPCN1Q9ULQ1 816 aa23.78■■□□□ 1.4
VPS53-210ENST00000571456 CDC27P30260 824 aa23.77■■□□□ 1.4
VPS53-210ENST00000571456 CCND3P30281 292 aaPredicted RBP23.77■■□□□ 1.4
VPS53-210ENST00000571456 RGS2P41220 211 aa23.77■■□□□ 1.4
VPS53-210ENST00000571456 TJAP1Q5JTD0 557 aa23.77■■□□□ 1.4
VPS53-210ENST00000571456 MORN1Q5T089 497 aa23.77■■□□□ 1.4
VPS53-210ENST00000571456 MCF2L2Q86YR7 1114 aa23.77■■□□□ 1.4
VPS53-210ENST00000571456 RAB11FIP4Q86YS3 637 aa23.77■■□□□ 1.4
VPS53-210ENST00000571456 TRIM22Q8IYM9 498 aa23.77■■□□□ 1.4
VPS53-210ENST00000571456 MMP19Q99542 508 aa23.77■■□□□ 1.4
VPS53-210ENST00000571456 RNF26Q9BY78 433 aaPredicted RBP23.77■■□□□ 1.4
VPS53-210ENST00000571456 RIPK3Q9Y572 518 aa23.77■■□□□ 1.4
VPS53-210ENST00000571456 CNTNAP5Q8WYK1 1306 aa23.77■■□□□ 1.4
VPS53-210ENST00000571456 BDP1A6H8Y1 2624 aa23.77■■□□□ 1.4
VPS53-210ENST00000571456 PEX10O60683 326 aa23.76■■□□□ 1.39
VPS53-210ENST00000571456 HOXC6P09630 235 aa23.76■■□□□ 1.39
VPS53-210ENST00000571456 ADD1P35611 737 aaKnown RBP23.76■■□□□ 1.39
VPS53-210ENST00000571456 PLA2G5P39877 138 aa23.76■■□□□ 1.39
VPS53-210ENST00000571456 AKAP17AQ02040 695 aaKnown RBP23.76■■□□□ 1.39
VPS53-210ENST00000571456 FUT2Q10981 343 aa23.76■■□□□ 1.39
VPS53-210ENST00000571456 SHHQ15465 462 aa23.76■■□□□ 1.39
VPS53-210ENST00000571456 HOMER1Q86YM7 354 aa23.76■■□□□ 1.39
VPS53-210ENST00000571456 SENP6Q9GZR1 1112 aaPredicted RBP23.76■■□□□ 1.39
VPS53-210ENST00000571456 DIS3Q9Y2L1 958 aaKnown RBP23.76■■□□□ 1.39
VPS53-210ENST00000571456 SMCHD1A6NHR9 2005 aa23.76■■□□□ 1.39
VPS53-210ENST00000571456 PRPF3O43395 683 aaKnown RBP23.75■■□□□ 1.39
VPS53-210ENST00000571456 SMAD3P84022 425 aaKnown RBP23.75■■□□□ 1.39
VPS53-210ENST00000571456 MAP2K5Q13163 448 aa23.75■■□□□ 1.39
VPS53-210ENST00000571456 SLC35G1Q2M3R5 365 aa23.75■■□□□ 1.39
VPS53-210ENST00000571456 FAM177A1Q8N128 213 aaPredicted RBP23.75■■□□□ 1.39
VPS53-210ENST00000571456 ANKRD35Q8N283 1001 aa23.75■■□□□ 1.39
VPS53-210ENST00000571456 USP6NLQ92738 828 aa23.75■■□□□ 1.39
VPS53-210ENST00000571456 PCDHA1Q9Y5I3 950 aa23.75■■□□□ 1.39
VPS53-210ENST00000571456 SNAP25P60880 206 aa23.74■■□□□ 1.39
VPS53-210ENST00000571456 CCT2P78371 535 aaKnown RBP23.74■■□□□ 1.39
VPS53-210ENST00000571456 NTRK3Q16288 839 aa23.74■■□□□ 1.39
VPS53-210ENST00000571456 GTF3C6Q969F1 213 aa23.74■■□□□ 1.39
VPS53-210ENST00000571456 DDX11Q96FC9 970 aa23.74■■□□□ 1.39
VPS53-210ENST00000571456 APBA2Q99767 749 aa23.74■■□□□ 1.39
VPS53-210ENST00000571456 LOC102724159A0A0B4J2E5 919 aa23.73■■□□□ 1.39
VPS53-210ENST00000571456 ADORA2AP29274 412 aa23.73■■□□□ 1.39
VPS53-210ENST00000571456 SLC4A3P48751 1232 aa23.73■■□□□ 1.39
VPS53-210ENST00000571456 GHRHRQ02643 423 aa23.73■■□□□ 1.39
VPS53-210ENST00000571456 PWP2Q15269 919 aaKnown RBP23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms