RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 NOVP48745 357 aa24.71■■□□□ 1.55
SQSTM1-210ENST00000506042 AAMPQ13685 434 aa24.71■■□□□ 1.55
SQSTM1-210ENST00000506042 TAPT1Q6NXT6 567 aa24.71■■□□□ 1.55
SQSTM1-210ENST00000506042 C16orf59Q7L2K0 433 aa24.71■■□□□ 1.55
SQSTM1-210ENST00000506042 OR6J1Q8NGC5 347 aa24.71■■□□□ 1.55
SQSTM1-210ENST00000506042 SCFD2Q8WU76 684 aa24.71■■□□□ 1.55
SQSTM1-210ENST00000506042 MTG1Q9BT17 334 aaPredicted RBP24.71■■□□□ 1.55
SQSTM1-210ENST00000506042 NOC4LQ9BVI4 516 aaKnown RBP24.71■■□□□ 1.55
SQSTM1-210ENST00000506042 THEGQ9P2T0 379 aa24.71■■□□□ 1.55
SQSTM1-210ENST00000506042 WDR19Q8NEZ3 1342 aa24.7■■□□□ 1.54
SQSTM1-210ENST00000506042 TRIM6-TRIM34B2RNG4 842 aa24.7■■□□□ 1.54
SQSTM1-210ENST00000506042 B4GALT4O60513 344 aa24.7■■□□□ 1.54
SQSTM1-210ENST00000506042 FGRP09769 529 aa24.7■■□□□ 1.54
SQSTM1-210ENST00000506042 CALML3P27482 149 aa24.7■■□□□ 1.54
SQSTM1-210ENST00000506042 RFC2P35250 354 aa24.7■■□□□ 1.54
SQSTM1-210ENST00000506042 CCL23P55773 120 aa24.7■■□□□ 1.54
SQSTM1-210ENST00000506042 SNAP25P60880 206 aa24.7■■□□□ 1.54
SQSTM1-210ENST00000506042 OTOP2Q7RTS6 562 aa24.7■■□□□ 1.54
SQSTM1-210ENST00000506042 CCDC155Q8N6L0 562 aa24.7■■□□□ 1.54
SQSTM1-210ENST00000506042 RETREG2Q8NC44 543 aa24.7■■□□□ 1.54
SQSTM1-210ENST00000506042 OTUD7AQ8TE49 926 aaPredicted RBP24.7■■□□□ 1.54
SQSTM1-210ENST00000506042 ESR2Q92731 530 aa24.7■■□□□ 1.54
SQSTM1-210ENST00000506042 TMEM47Q9BQJ4 181 aa24.7■■□□□ 1.54
SQSTM1-210ENST00000506042 ALDH8A1Q9H2A2 487 aaPredicted RBP24.7■■□□□ 1.54
SQSTM1-210ENST00000506042 PRDM12Q9H4Q4 367 aa24.7■■□□□ 1.54
SQSTM1-210ENST00000506042 GPCPD1Q9NPB8 672 aa24.7■■□□□ 1.54
SQSTM1-210ENST00000506042 PDGFCQ9NRA1 345 aa24.7■■□□□ 1.54
SQSTM1-210ENST00000506042 NOD1Q9Y239 953 aa24.7■■□□□ 1.54
SQSTM1-210ENST00000506042 A0A0C4DFX4 3053 aa24.69■■□□□ 1.54
SQSTM1-210ENST00000506042 MYL3P08590 195 aa24.69■■□□□ 1.54
SQSTM1-210ENST00000506042 IGFBP4P22692 258 aa24.69■■□□□ 1.54
SQSTM1-210ENST00000506042 SLC16A2P36021 539 aa24.69■■□□□ 1.54
SQSTM1-210ENST00000506042 PDE1AP54750 535 aa24.69■■□□□ 1.54
SQSTM1-210ENST00000506042 FAM47CQ5HY64 1035 aa24.69■■□□□ 1.54
SQSTM1-210ENST00000506042 IQCA1Q86XH1 822 aa24.69■■□□□ 1.54
SQSTM1-210ENST00000506042 FRMPD2Q68DX3 1309 aaPredicted RBP24.68■■□□□ 1.54
SQSTM1-210ENST00000506042 FGAP02671 866 aa24.68■■□□□ 1.54
SQSTM1-210ENST00000506042 PTPN11Q06124 597 aaPredicted RBP24.68■■□□□ 1.54
SQSTM1-210ENST00000506042 PPP2R2DQ66LE6 453 aa24.68■■□□□ 1.54
SQSTM1-210ENST00000506042 PPM1EQ8WY54 764 aa24.68■■□□□ 1.54
SQSTM1-210ENST00000506042 TRPV6Q9H1D0 765 aa24.68■■□□□ 1.54
SQSTM1-210ENST00000506042 PCDHA11Q9Y5I1 949 aa24.68■■□□□ 1.54
SQSTM1-210ENST00000506042 TNKSO95271 1327 aa24.67■■□□□ 1.54
SQSTM1-210ENST00000506042 PBX2P40425 430 aa24.67■■□□□ 1.54
SQSTM1-210ENST00000506042 BFSP2Q13515 415 aa24.67■■□□□ 1.54
SQSTM1-210ENST00000506042 TTLL4Q14679 1199 aa24.67■■□□□ 1.54
SQSTM1-210ENST00000506042 AAK1Q2M2I8 961 aa24.67■■□□□ 1.54
SQSTM1-210ENST00000506042 VPS53Q5VIR6 699 aa24.67■■□□□ 1.54
SQSTM1-210ENST00000506042 PRDM6Q9NQX0 595 aa24.67■■□□□ 1.54
SQSTM1-210ENST00000506042 CCDC171Q6TFL3 1326 aa24.66■■□□□ 1.54
SQSTM1-210ENST00000506042 GRXCR1A8MXD5 290 aa24.66■■□□□ 1.54
SQSTM1-210ENST00000506042 KIF28PB7ZC32 967 aa24.66■■□□□ 1.54
SQSTM1-210ENST00000506042 NFIBO00712 420 aa24.66■■□□□ 1.54
SQSTM1-210ENST00000506042 HSPD1P10809 573 aaKnown RBP24.66■■□□□ 1.54
SQSTM1-210ENST00000506042 PDHBP11177 359 aa24.66■■□□□ 1.54
SQSTM1-210ENST00000506042 ATP2A2P16615 1042 aaKnown RBP24.66■■□□□ 1.54
SQSTM1-210ENST00000506042 RRP1P56182 461 aaKnown RBP24.66■■□□□ 1.54
SQSTM1-210ENST00000506042 PSMC6P62333 389 aa24.66■■□□□ 1.54
SQSTM1-210ENST00000506042 PURAQ00577 322 aaKnown RBP24.66■■□□□ 1.54
SQSTM1-210ENST00000506042 HDAC1Q13547 482 aaPredicted RBP24.66■■□□□ 1.54
SQSTM1-210ENST00000506042 NFRKBQ6P4R8 1299 aa24.66■■□□□ 1.54
SQSTM1-210ENST00000506042 NKX2-4Q9H2Z4 354 aa24.66■■□□□ 1.54
SQSTM1-210ENST00000506042 LAMA2P24043 3122 aaKnown RBP24.66■■□□□ 1.54
SQSTM1-210ENST00000506042 SALL3Q9BXA9 1300 aa24.65■■□□□ 1.54
SQSTM1-210ENST00000506042 RBM47A0AV96 593 aaKnown RBP24.65■■□□□ 1.54
SQSTM1-210ENST00000506042 TNFRSF10AO00220 468 aa24.65■■□□□ 1.54
SQSTM1-210ENST00000506042 HIP1O00291 1037 aa24.65■■□□□ 1.54
SQSTM1-210ENST00000506042 ZNF213O14771 459 aa24.65■■□□□ 1.54
SQSTM1-210ENST00000506042 GTPBP6O43824 516 aaPredicted RBP24.65■■□□□ 1.54
SQSTM1-210ENST00000506042 MRPS5P82675 430 aaKnown RBP24.65■■□□□ 1.54
SQSTM1-210ENST00000506042 ZNF543Q08ER8 600 aa24.65■■□□□ 1.54
SQSTM1-210ENST00000506042 TTBK2Q6IQ55 1244 aa24.65■■□□□ 1.54
SQSTM1-210ENST00000506042 MCF2L2Q86YR7 1114 aa24.65■■□□□ 1.54
SQSTM1-210ENST00000506042 RGS22Q8NE09 1264 aa24.65■■□□□ 1.54
SQSTM1-210ENST00000506042 RILPL2Q969X0 211 aa24.65■■□□□ 1.54
SQSTM1-210ENST00000506042 INCENPQ9NQS7 918 aa24.65■■□□□ 1.54
SQSTM1-210ENST00000506042 UNC80Q8N2C7 3258 aa24.64■■□□□ 1.54
SQSTM1-210ENST00000506042 PITPNM1O00562 1244 aa24.64■■□□□ 1.54
SQSTM1-210ENST00000506042 FOXP2O15409 715 aa24.64■■□□□ 1.54
SQSTM1-210ENST00000506042 DGKHQ86XP1 1220 aa24.64■■□□□ 1.54
SQSTM1-210ENST00000506042 SLC9A7Q96T83 725 aa24.64■■□□□ 1.54
SQSTM1-210ENST00000506042 TXNP10599 105 aaKnown RBP24.63■■□□□ 1.53
SQSTM1-210ENST00000506042 RPS6P62753 249 aaKnown RBP24.63■■□□□ 1.53
SQSTM1-210ENST00000506042 TMEM67Q5HYA8 995 aa24.63■■□□□ 1.53
SQSTM1-210ENST00000506042 KAT14Q9H8E8 782 aa24.63■■□□□ 1.53
SQSTM1-210ENST00000506042 CXXC1Q9P0U4 656 aaPredicted RBP24.63■■□□□ 1.53
SQSTM1-210ENST00000506042 GRIN2DO15399 1336 aa24.62■■□□□ 1.53
SQSTM1-210ENST00000506042 ABCB11O95342 1321 aa24.62■■□□□ 1.53
SQSTM1-210ENST00000506042 A0A0D9SFI3 127 aa24.62■■□□□ 1.53
SQSTM1-210ENST00000506042 PARNO95453 639 aaKnown RBP24.62■■□□□ 1.53
SQSTM1-210ENST00000506042 HAND2P61296 217 aa24.62■■□□□ 1.53
SQSTM1-210ENST00000506042 SLC30A10Q6XR72 485 aa24.62■■□□□ 1.53
SQSTM1-210ENST00000506042 PHOSPHO2Q8TCD6 241 aa24.62■■□□□ 1.53
SQSTM1-210ENST00000506042 FAM227BQ96M60 508 aa24.62■■□□□ 1.53
SQSTM1-210ENST00000506042 ASB2Q96Q27 587 aa24.62■■□□□ 1.53
SQSTM1-210ENST00000506042 FTOQ9C0B1 505 aaKnown RBP eCLIP24.62■■□□□ 1.53
SQSTM1-210ENST00000506042 WNT8AQ9H1J5 351 aa24.62■■□□□ 1.53
SQSTM1-210ENST00000506042 DIAPH3Q9NSV4 1193 aa24.62■■□□□ 1.53
SQSTM1-210ENST00000506042 UMODL1Q5DID0 1318 aa24.61■■□□□ 1.53
SQSTM1-210ENST00000506042 DHX16O60231 1041 aaKnown RBP24.61■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms