RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 CALML4Q96GE6 196 aa28.41■■■□□ 2.14
SHOX2-201ENST00000389589 NFE2L3Q9Y4A8 694 aa28.41■■■□□ 2.14
SHOX2-201ENST00000389589 USP17L15C9J2P7 530 aa28.4■■■□□ 2.14
SHOX2-201ENST00000389589 USP17L13C9JLJ4 530 aa28.4■■■□□ 2.14
SHOX2-201ENST00000389589 USP17L11C9JVI0 530 aa28.4■■■□□ 2.14
SHOX2-201ENST00000389589 USP17L18D6R9N7 530 aa28.4■■■□□ 2.14
SHOX2-201ENST00000389589 USP17L22D6RA61 530 aa28.4■■■□□ 2.14
SHOX2-201ENST00000389589 USP17L17D6RBQ6 530 aa28.4■■■□□ 2.14
SHOX2-201ENST00000389589 USP17L19D6RCP7 530 aa28.4■■■□□ 2.14
SHOX2-201ENST00000389589 USP17L20D6RJB6 530 aa28.4■■■□□ 2.14
SHOX2-201ENST00000389589 PLA2G6O60733 806 aa28.4■■■□□ 2.14
SHOX2-201ENST00000389589 SERPINC1P01008 464 aa28.4■■■□□ 2.14
SHOX2-201ENST00000389589 RPN1P04843 607 aaKnown RBP28.4■■■□□ 2.14
SHOX2-201ENST00000389589 USP17L24Q0WX57 530 aa28.4■■■□□ 2.14
SHOX2-201ENST00000389589 DHX8Q14562 1220 aaKnown RBP28.4■■■□□ 2.14
SHOX2-201ENST00000389589 USP17L6PQ6QN14 398 aa28.4■■■□□ 2.14
SHOX2-201ENST00000389589 MICALL2Q8IY33 904 aa28.4■■■□□ 2.14
SHOX2-201ENST00000389589 LRWD1Q9UFC0 647 aa28.4■■■□□ 2.14
SHOX2-201ENST00000389589 MEIS2O14770 477 aa28.39■■■□□ 2.14
SHOX2-201ENST00000389589 FOSP01100 380 aaPredicted RBP28.39■■■□□ 2.14
SHOX2-201ENST00000389589 GSDMDP57764 484 aa28.39■■■□□ 2.14
SHOX2-201ENST00000389589 ANO3Q9BYT9 981 aa28.39■■■□□ 2.14
SHOX2-201ENST00000389589 PLCG1P19174 1290 aa28.39■■■□□ 2.13
SHOX2-201ENST00000389589 UBASH3AP57075 661 aa28.39■■■□□ 2.13
SHOX2-201ENST00000389589 FAM83BQ5T0W9 1011 aa28.39■■■□□ 2.13
SHOX2-201ENST00000389589 MOXD1Q6UVY6 613 aa28.39■■■□□ 2.13
SHOX2-201ENST00000389589 GINM1Q9NU53 330 aa28.39■■■□□ 2.13
SHOX2-201ENST00000389589 PPP1R3GB7ZBB8 358 aa28.38■■■□□ 2.13
SHOX2-201ENST00000389589 ZNF18P17022 549 aa28.38■■■□□ 2.13
SHOX2-201ENST00000389589 KIAA1755Q5JYT7 1200 aa28.38■■■□□ 2.13
SHOX2-201ENST00000389589 ZNF658Q5TYW1 1059 aaPredicted RBP28.38■■■□□ 2.13
SHOX2-201ENST00000389589 KIAA1524Q8TCG1 905 aa28.38■■■□□ 2.13
SHOX2-201ENST00000389589 CNOT7Q9UIV1 285 aaKnown RBP28.38■■■□□ 2.13
SHOX2-201ENST00000389589 SNAP25P60880 206 aa28.38■■■□□ 2.13
SHOX2-201ENST00000389589 KCNB1Q14721 858 aa28.38■■■□□ 2.13
SHOX2-201ENST00000389589 USH1GQ495M9 461 aa28.38■■■□□ 2.13
SHOX2-201ENST00000389589 FAM160B2Q86V87 743 aa28.38■■■□□ 2.13
SHOX2-201ENST00000389589 TEPSINQ96N21 525 aa28.38■■■□□ 2.13
SHOX2-201ENST00000389589 MMTAG2Q9BU76 263 aaKnown RBP28.38■■■□□ 2.13
SHOX2-201ENST00000389589 GJA3Q9Y6H8 435 aa28.38■■■□□ 2.13
SHOX2-201ENST00000389589 OFD1O75665 1012 aa28.37■■■□□ 2.13
SHOX2-201ENST00000389589 CD44P16070 742 aaKnown RBP28.37■■■□□ 2.13
SHOX2-201ENST00000389589 SPATA1Q5VX52 437 aa28.37■■■□□ 2.13
SHOX2-201ENST00000389589 PDZRN4Q6ZMN7 1036 aaPredicted RBP28.37■■■□□ 2.13
SHOX2-201ENST00000389589 SYNRGQ9UMZ2 1314 aa28.37■■■□□ 2.13
SHOX2-201ENST00000389589 CYP3A7-CYP3A51PA0A087WV96 503 aa28.36■■■□□ 2.13
SHOX2-201ENST00000389589 CYP3A7P24462 503 aa28.36■■■□□ 2.13
SHOX2-201ENST00000389589 FILIP1Q7Z7B0 1213 aa28.36■■■□□ 2.13
SHOX2-201ENST00000389589 TRMT44Q8IYL2 757 aaKnown RBP28.36■■■□□ 2.13
SHOX2-201ENST00000389589 PSDA5PKW4 1024 aaPredicted RBP28.36■■■□□ 2.13
SHOX2-201ENST00000389589 PHF20L1A8MW92 1017 aa28.36■■■□□ 2.13
SHOX2-201ENST00000389589 EGFRP00533 1210 aa28.36■■■□□ 2.13
SHOX2-201ENST00000389589 AMPD3Q01432 767 aa28.36■■■□□ 2.13
SHOX2-201ENST00000389589 NOLC1Q14978 699 aaKnown RBP eCLIP28.36■■■□□ 2.13
SHOX2-201ENST00000389589 LRRC8AQ8IWT6 810 aa28.36■■■□□ 2.13
SHOX2-201ENST00000389589 CACTINQ8WUQ7 758 aaKnown RBP28.36■■■□□ 2.13
SHOX2-201ENST00000389589 MED15Q96RN5 788 aa28.36■■■□□ 2.13
SHOX2-201ENST00000389589 PLIN2Q99541 437 aa28.36■■■□□ 2.13
SHOX2-201ENST00000389589 PYCARDQ9ULZ3 195 aa28.36■■■□□ 2.13
SHOX2-201ENST00000389589 DICER1Q9UPY3 1922 aaKnown RBP28.35■■■□□ 2.13
SHOX2-201ENST00000389589 MARCH6O60337 910 aa28.35■■■□□ 2.13
SHOX2-201ENST00000389589 CDK11BP21127 795 aaKnown RBP28.35■■■□□ 2.13
SHOX2-201ENST00000389589 PRELPP51888 382 aa28.35■■■□□ 2.13
SHOX2-201ENST00000389589 MBOAT7Q96N66 472 aa28.35■■■□□ 2.13
SHOX2-201ENST00000389589 STK17AQ9UEE5 414 aa28.35■■■□□ 2.13
SHOX2-201ENST00000389589 FEM1BQ9UK73 627 aa28.35■■■□□ 2.13
SHOX2-201ENST00000389589 SPDYE3A6NKU9 549 aa28.34■■■□□ 2.13
SHOX2-201ENST00000389589 TMC6Q7Z403 805 aa28.34■■■□□ 2.13
SHOX2-201ENST00000389589 UPF1Q92900 1129 aaKnown RBP eCLIP28.34■■■□□ 2.13
SHOX2-201ENST00000389589 RANBP17Q9H2T7 1088 aaKnown RBP28.34■■■□□ 2.13
SHOX2-201ENST00000389589 SPTLC3Q9NUV7 552 aa28.34■■■□□ 2.13
SHOX2-201ENST00000389589 PIK3CDO00329 1044 aa28.34■■■□□ 2.13
SHOX2-201ENST00000389589 KRT79Q5XKE5 535 aa28.34■■■□□ 2.13
SHOX2-201ENST00000389589 KLHL10Q6JEL2 608 aa28.34■■■□□ 2.13
SHOX2-201ENST00000389589 SAMD7Q7Z3H4 446 aa28.34■■■□□ 2.13
SHOX2-201ENST00000389589 CRYGNQ8WXF5 182 aa28.34■■■□□ 2.13
SHOX2-201ENST00000389589 HAS1Q92839 578 aa28.34■■■□□ 2.13
SHOX2-201ENST00000389589 CCDC47Q96A33 483 aaKnown RBP28.34■■■□□ 2.13
SHOX2-201ENST00000389589 GTPBP4Q9BZE4 634 aaKnown RBP28.34■■■□□ 2.13
SHOX2-201ENST00000389589 LRMPQ12912 555 aa28.33■■■□□ 2.13
SHOX2-201ENST00000389589 KIF4BQ2VIQ3 1234 aa28.33■■■□□ 2.13
SHOX2-201ENST00000389589 SMYD4Q8IYR2 804 aaPredicted RBP28.33■■■□□ 2.13
SHOX2-201ENST00000389589 NLGN2Q8NFZ4 835 aa28.33■■■□□ 2.13
SHOX2-201ENST00000389589 CDK5RAP3Q96JB5 506 aa28.33■■■□□ 2.13
SHOX2-201ENST00000389589 C7orf25Q9BPX7 421 aa28.33■■■□□ 2.13
SHOX2-201ENST00000389589 HACL1Q9UJ83 578 aa28.33■■■□□ 2.13
SHOX2-201ENST00000389589 SMCHD1A6NHR9 2005 aa28.33■■■□□ 2.13
SHOX2-201ENST00000389589 ARHGAP4P98171 946 aa28.33■■■□□ 2.13
SHOX2-201ENST00000389589 TBC1D10BQ4KMP7 808 aaPredicted RBP28.33■■■□□ 2.13
SHOX2-201ENST00000389589 LRRC15Q8TF66 581 aa28.33■■■□□ 2.13
SHOX2-201ENST00000389589 RWDD2AQ9UIY3 292 aa28.33■■■□□ 2.13
SHOX2-201ENST00000389589 CCDC150Q8NCX0 1101 aa28.32■■■□□ 2.12
SHOX2-201ENST00000389589 FRMD4AQ9P2Q2 1039 aaPredicted RBP28.32■■■□□ 2.12
SHOX2-201ENST00000389589 PCDHA12Q9UN75 941 aa28.32■■■□□ 2.12
SHOX2-201ENST00000389589 SLC26A4O43511 780 aa28.31■■■□□ 2.12
SHOX2-201ENST00000389589 KLRC4O43908 158 aa28.31■■■□□ 2.12
SHOX2-201ENST00000389589 RHOBTB3O94955 611 aa28.31■■■□□ 2.12
SHOX2-201ENST00000389589 SREBF1P36956 1147 aa28.31■■■□□ 2.12
SHOX2-201ENST00000389589 GRB10Q13322 594 aa28.31■■■□□ 2.12
SHOX2-201ENST00000389589 ZYXQ15942 572 aaKnown RBP28.31■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms