RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 IGDCC4Q8TDY8 1250 aa19■□□□□ 0.63
LSM1-201ENST00000311351 MORC4Q8TE76 937 aa19■□□□□ 0.63
LSM1-201ENST00000311351 TBC1D5Q92609 795 aa19■□□□□ 0.63
LSM1-201ENST00000311351 PRC1O43663 620 aa18.99■□□□□ 0.63
LSM1-201ENST00000311351 PPP1R11O60927 126 aaPredicted RBP18.99■□□□□ 0.63
LSM1-201ENST00000311351 CST5P28325 142 aaPredicted RBP18.99■□□□□ 0.63
LSM1-201ENST00000311351 ACLYP53396 1101 aa18.99■□□□□ 0.63
LSM1-201ENST00000311351 GJA9P57773 515 aa18.99■□□□□ 0.63
LSM1-201ENST00000311351 TROAPQ12815 778 aa18.99■□□□□ 0.63
LSM1-201ENST00000311351 KCNA10Q16322 511 aa18.99■□□□□ 0.63
LSM1-201ENST00000311351 CCSAPQ6IQ19 270 aaPredicted RBP18.99■□□□□ 0.63
LSM1-201ENST00000311351 TAPT1Q6NXT6 567 aa18.99■□□□□ 0.63
LSM1-201ENST00000311351 NOL8Q76FK4 1167 aaKnown RBP18.99■□□□□ 0.63
LSM1-201ENST00000311351 MYL10Q9BUA6 226 aa18.99■□□□□ 0.63
LSM1-201ENST00000311351 LY9Q9HBG7 655 aa18.99■□□□□ 0.63
LSM1-201ENST00000311351 VTA1Q9NP79 307 aa18.99■□□□□ 0.63
LSM1-201ENST00000311351 CTAGE5O15320 804 aa18.98■□□□□ 0.63
LSM1-201ENST00000311351 SMPD1P17405 629 aa18.98■□□□□ 0.63
LSM1-201ENST00000311351 MDM2Q00987 491 aaPredicted RBP18.98■□□□□ 0.63
LSM1-201ENST00000311351 BEX3Q00994 111 aa18.98■□□□□ 0.63
LSM1-201ENST00000311351 TLK2Q86UE8 772 aa18.98■□□□□ 0.63
LSM1-201ENST00000311351 HOMER1Q86YM7 354 aa18.98■□□□□ 0.63
LSM1-201ENST00000311351 NUP133Q8WUM0 1156 aa18.98■□□□□ 0.63
LSM1-201ENST00000311351 MTMR8Q96EF0 704 aa18.98■□□□□ 0.63
LSM1-201ENST00000311351 TSEN34Q9BSV6 310 aaKnown RBP18.98■□□□□ 0.63
LSM1-201ENST00000311351 COL20A1Q9P218 1284 aa18.98■□□□□ 0.63
LSM1-201ENST00000311351 GNEQ9Y223 722 aaKnown RBP18.98■□□□□ 0.63
LSM1-201ENST00000311351 MOXD2PA6NHM9 499 aa18.97■□□□□ 0.63
LSM1-201ENST00000311351 SH2B2O14492 632 aaPredicted RBP18.97■□□□□ 0.63
LSM1-201ENST00000311351 CASC1Q6TDU7 716 aa18.97■□□□□ 0.63
LSM1-201ENST00000311351 CATIPQ7Z7H3 387 aa18.97■□□□□ 0.63
LSM1-201ENST00000311351 PIGSQ96S52 555 aa18.97■□□□□ 0.63
LSM1-201ENST00000311351 LRRC2Q9BYS8 371 aa18.97■□□□□ 0.63
LSM1-201ENST00000311351 SPC25Q9HBM1 224 aa18.97■□□□□ 0.63
LSM1-201ENST00000311351 PRDM5Q9NQX1 630 aaPredicted RBP18.97■□□□□ 0.63
LSM1-201ENST00000311351 STARD7Q9NQZ5 370 aa18.97■□□□□ 0.63
LSM1-201ENST00000311351 PDLIM7Q9NR12 457 aa18.97■□□□□ 0.63
LSM1-201ENST00000311351 LAMA3Q16787 3333 aa18.97■□□□□ 0.63
LSM1-201ENST00000311351 OPLAHO14841 1288 aa18.96■□□□□ 0.63
LSM1-201ENST00000311351 ZBTB5O15062 677 aa18.96■□□□□ 0.63
LSM1-201ENST00000311351 CYTH3O43739 400 aa18.96■□□□□ 0.63
LSM1-201ENST00000311351 ASGR1P07306 291 aa18.96■□□□□ 0.63
LSM1-201ENST00000311351 EDNRBP24530 442 aa18.96■□□□□ 0.63
LSM1-201ENST00000311351 MCM5P33992 734 aa18.96■□□□□ 0.63
LSM1-201ENST00000311351 TLE2Q04725 743 aa18.96■□□□□ 0.63
LSM1-201ENST00000311351 PDE4DQ08499 809 aa18.96■□□□□ 0.63
LSM1-201ENST00000311351 GNASQ5JWF2 1037 aa18.96■□□□□ 0.63
LSM1-201ENST00000311351 C1orf53Q5VUE5 145 aa18.96■□□□□ 0.63
LSM1-201ENST00000311351 ZNF654Q8IZM8 581 aa18.96■□□□□ 0.63
LSM1-201ENST00000311351 RGS22Q8NE09 1264 aa18.96■□□□□ 0.63
LSM1-201ENST00000311351 SYTL5Q8TDW5 730 aaPredicted RBP18.96■□□□□ 0.63
LSM1-201ENST00000311351 AMNQ9BXJ7 453 aa18.96■□□□□ 0.63
LSM1-201ENST00000311351 MRPL11Q9Y3B7 192 aaKnown RBP18.96■□□□□ 0.63
LSM1-201ENST00000311351 KIAA1217Q5T5P2 1943 aa18.96■□□□□ 0.63
LSM1-201ENST00000311351 LOC102724159A0A0B4J2E5 919 aa18.95■□□□□ 0.62
LSM1-201ENST00000311351 PQBP1O60828 265 aaKnown RBP18.95■□□□□ 0.62
LSM1-201ENST00000311351 PWP2Q15269 919 aaKnown RBP18.95■□□□□ 0.62
LSM1-201ENST00000311351 SH3RF1Q7Z6J0 888 aa18.95■□□□□ 0.62
LSM1-201ENST00000311351 RAB11FIP4Q86YS3 637 aa18.95■□□□□ 0.62
LSM1-201ENST00000311351 PCSK9Q8NBP7 692 aaKnown RBP18.95■□□□□ 0.62
LSM1-201ENST00000311351 DNERQ8NFT8 737 aa18.95■□□□□ 0.62
LSM1-201ENST00000311351 PIBF1Q8WXW3 757 aa18.95■□□□□ 0.62
LSM1-201ENST00000311351 TAAR1Q96RJ0 339 aa18.95■□□□□ 0.62
LSM1-201ENST00000311351 RIOX1Q9H6W3 641 aa18.95■□□□□ 0.62
LSM1-201ENST00000311351 PRKAG2Q9UGJ0 569 aa18.95■□□□□ 0.62
LSM1-201ENST00000311351 A0A1W2PPC1 479 aa18.94■□□□□ 0.62
LSM1-201ENST00000311351 DYNC1LI2O43237 492 aaPredicted RBP18.94■□□□□ 0.62
LSM1-201ENST00000311351 DDAH1O94760 285 aa18.94■□□□□ 0.62
LSM1-201ENST00000311351 CFBP00751 764 aa18.94■□□□□ 0.62
LSM1-201ENST00000311351 RXRAP19793 462 aa18.94■□□□□ 0.62
LSM1-201ENST00000311351 BMP8BP34820 402 aa18.94■□□□□ 0.62
LSM1-201ENST00000311351 NKX3-2P78367 333 aa18.94■□□□□ 0.62
LSM1-201ENST00000311351 IQSEC1Q6DN90 963 aa18.94■□□□□ 0.62
LSM1-201ENST00000311351 NFXL1Q6ZNB6 911 aa18.94■□□□□ 0.62
LSM1-201ENST00000311351 MCF2L2Q86YR7 1114 aa18.94■□□□□ 0.62
LSM1-201ENST00000311351 RASEFQ8IZ41 740 aa18.94■□□□□ 0.62
LSM1-201ENST00000311351 TMEM87BQ96K49 555 aa18.94■□□□□ 0.62
LSM1-201ENST00000311351 GLT1D1Q96MS3 346 aa18.94■□□□□ 0.62
LSM1-201ENST00000311351 MTA3Q9BTC8 594 aa18.94■□□□□ 0.62
LSM1-201ENST00000311351 UBE2OQ9C0C9 1292 aaKnown RBP18.94■□□□□ 0.62
LSM1-201ENST00000311351 AP5M1Q9H0R1 490 aa18.94■□□□□ 0.62
LSM1-201ENST00000311351 PCDHA1Q9Y5I3 950 aa18.94■□□□□ 0.62
LSM1-201ENST00000311351 TRIM43BA6NCK2 446 aa18.93■□□□□ 0.62
LSM1-201ENST00000311351 CENPBP07199 599 aaPredicted RBP18.93■□□□□ 0.62
LSM1-201ENST00000311351 FSCN1Q16658 493 aaKnown RBP18.93■□□□□ 0.62
LSM1-201ENST00000311351 DUSP28Q4G0W2 176 aa18.93■□□□□ 0.62
LSM1-201ENST00000311351 RNF20Q5VTR2 975 aa18.93■□□□□ 0.62
LSM1-201ENST00000311351 CTCFLQ8NI51 663 aaPredicted RBP18.93■□□□□ 0.62
LSM1-201ENST00000311351 TRIM43Q96BQ3 446 aaPredicted RBP18.93■□□□□ 0.62
LSM1-201ENST00000311351 TCEANC2Q96MN5 208 aa18.93■□□□□ 0.62
LSM1-201ENST00000311351 MPHOSPH6Q99547 160 aaKnown RBP18.93■□□□□ 0.62
LSM1-201ENST00000311351 WDR11Q9BZH6 1224 aa18.93■□□□□ 0.62
LSM1-201ENST00000311351 SZT2Q5T011 3432 aa18.93■□□□□ 0.62
LSM1-201ENST00000311351 RBM47A0AV96 593 aaKnown RBP18.92■□□□□ 0.62
LSM1-201ENST00000311351 CCDC69A6NI79 296 aa18.92■□□□□ 0.62
LSM1-201ENST00000311351 SOX1O00570 391 aaPredicted RBP18.92■□□□□ 0.62
LSM1-201ENST00000311351 PLEKHA8P1O95397 391 aa18.92■□□□□ 0.62
LSM1-201ENST00000311351 CLTBP09497 229 aa18.92■□□□□ 0.62
LSM1-201ENST00000311351 EIF2AK2P19525 551 aaKnown RBP18.92■□□□□ 0.62
LSM1-201ENST00000311351 ADCK5Q3MIX3 580 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms