RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 GOLGA8AA7E2F4 631 aa19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 PGK2P07205 417 aa19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 USH1GQ495M9 461 aa19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 FBXO11Q86XK2 927 aa19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 HOMER1Q86YM7 354 aa19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 ANKRD35Q8N283 1001 aa19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 NPLOC4Q8TAT6 608 aa19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 TRIB2Q92519 343 aa19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 KIF2CQ99661 725 aa19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 BACH2Q9BYV9 841 aa19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 ALDH8A1Q9H2A2 487 aaPredicted RBP19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 UPF2Q9HAU5 1272 aaKnown RBP19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 PPP1R11O60927 126 aaPredicted RBP19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 PDIA3P30101 505 aaKnown RBP19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 CDC27P30260 824 aa19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 METAP2P50579 478 aaKnown RBP eCLIP19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 PPP2R5BQ15173 497 aa19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 CCL14Q16627 93 aa19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 CLEC4DQ8WXI8 215 aa19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 DDX11Q96FC9 970 aa19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 AMNQ9BXJ7 453 aa19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 A1CFQ9NQ94 594 aaKnown RBP19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 SLC5A4Q9NY91 659 aa19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 NID2Q14112 1375 aa19.2■□□□□ 0.66
CCDC28A-202ENST00000611852 DNAJC25-GNG10A0A024R161 153 aa19.19■□□□□ 0.66
CCDC28A-202ENST00000611852 PNMA6FA0A0J9YX94 578 aa19.19■□□□□ 0.66
CCDC28A-202ENST00000611852 NFIBO00712 420 aa19.19■□□□□ 0.66
CCDC28A-202ENST00000611852 ABCB11O95342 1321 aa19.19■□□□□ 0.66
CCDC28A-202ENST00000611852 NEK4P51957 841 aa19.19■□□□□ 0.66
CCDC28A-202ENST00000611852 TRMT44Q8IYL2 757 aaKnown RBP19.19■□□□□ 0.66
CCDC28A-202ENST00000611852 CCDC82Q8N4S0 544 aa19.19■□□□□ 0.66
CCDC28A-202ENST00000611852 RRP36Q96EU6 259 aaKnown RBP19.19■□□□□ 0.66
CCDC28A-202ENST00000611852 ZNF333Q96JL9 665 aa19.19■□□□□ 0.66
CCDC28A-202ENST00000611852 LARP6Q9BRS8 491 aaKnown RBP19.19■□□□□ 0.66
CCDC28A-202ENST00000611852 FLRT1Q9NZU1 646 aa19.19■□□□□ 0.66
CCDC28A-202ENST00000611852 HMGCRP04035 888 aa19.18■□□□□ 0.66
CCDC28A-202ENST00000611852 ADD1P35611 737 aaKnown RBP19.18■□□□□ 0.66
CCDC28A-202ENST00000611852 FUT2Q10981 343 aa19.18■□□□□ 0.66
CCDC28A-202ENST00000611852 ZNF792Q3KQV3 632 aa19.18■□□□□ 0.66
CCDC28A-202ENST00000611852 PIBF1Q8WXW3 757 aa19.18■□□□□ 0.66
CCDC28A-202ENST00000611852 ZNF274Q96GC6 653 aaPredicted RBP19.18■□□□□ 0.66
CCDC28A-202ENST00000611852 BIN2Q9UBW5 565 aaPredicted RBP19.18■□□□□ 0.66
CCDC28A-202ENST00000611852 DIS3Q9Y2L1 958 aaKnown RBP19.18■□□□□ 0.66
CCDC28A-202ENST00000611852 PFASO15067 1338 aa19.17■□□□□ 0.66
CCDC28A-202ENST00000611852 CNTNAP5Q8WYK1 1306 aa19.17■□□□□ 0.66
CCDC28A-202ENST00000611852 CCDC196A0A1B0GTZ2 297 aa19.17■□□□□ 0.66
CCDC28A-202ENST00000611852 IGHA2P01877 340 aa19.17■□□□□ 0.66
CCDC28A-202ENST00000611852 INHAP05111 366 aa19.17■□□□□ 0.66
CCDC28A-202ENST00000611852 AK2P54819 239 aa19.17■□□□□ 0.66
CCDC28A-202ENST00000611852 NSMFQ6X4W1 530 aa19.17■□□□□ 0.66
CCDC28A-202ENST00000611852 MAML3Q96JK9 1138 aa19.17■□□□□ 0.66
CCDC28A-202ENST00000611852 CYP39A1Q9NYL5 469 aa19.17■□□□□ 0.66
CCDC28A-202ENST00000611852 PCDHA1Q9Y5I3 950 aa19.17■□□□□ 0.66
CCDC28A-202ENST00000611852 PLXNA1Q9UIW2 1896 aa19.17■□□□□ 0.66
CCDC28A-202ENST00000611852 TRIM32Q13049 653 aa19.16■□□□□ 0.66
CCDC28A-202ENST00000611852 ANKRD1Q15327 319 aa19.16■□□□□ 0.66
CCDC28A-202ENST00000611852 OLFML2BQ68BL8 750 aa19.16■□□□□ 0.66
CCDC28A-202ENST00000611852 SEC63Q9UGP8 760 aaKnown RBP19.16■□□□□ 0.66
CCDC28A-202ENST00000611852 CCT2P78371 535 aaKnown RBP19.15■□□□□ 0.66
CCDC28A-202ENST00000611852 TRAF1Q13077 416 aa19.15■□□□□ 0.66
CCDC28A-202ENST00000611852 BAATQ14032 418 aaPredicted RBP19.15■□□□□ 0.66
CCDC28A-202ENST00000611852 FAM133AQ8N9E0 248 aa19.15■□□□□ 0.66
CCDC28A-202ENST00000611852 RGS22Q8NE09 1264 aa19.15■□□□□ 0.66
CCDC28A-202ENST00000611852 TBC1D32Q96NH3 1257 aa19.15■□□□□ 0.66
CCDC28A-202ENST00000611852 MRPL11Q9Y3B7 192 aaKnown RBP19.15■□□□□ 0.66
CCDC28A-202ENST00000611852 hCG_1642624A0A1W2PR95 340 aa19.15■□□□□ 0.66
CCDC28A-202ENST00000611852 POTEB2H3BUK9 544 aa19.15■□□□□ 0.66
CCDC28A-202ENST00000611852 OPLAHO14841 1288 aa19.15■□□□□ 0.66
CCDC28A-202ENST00000611852 UBXN2AP68543 259 aa19.15■□□□□ 0.66
CCDC28A-202ENST00000611852 CNTN2Q02246 1040 aa19.15■□□□□ 0.66
CCDC28A-202ENST00000611852 FGD4Q96M96 766 aa19.15■□□□□ 0.66
CCDC28A-202ENST00000611852 NCOA5Q9HCD5 579 aaKnown RBP19.15■□□□□ 0.66
CCDC28A-202ENST00000611852 TPCN1Q9ULQ1 816 aa19.15■□□□□ 0.66
CCDC28A-202ENST00000611852 PTPDC1A2A3K4 754 aa19.14■□□□□ 0.65
CCDC28A-202ENST00000611852 MYCP01106 439 aaPredicted RBP19.14■□□□□ 0.65
CCDC28A-202ENST00000611852 RPS6P62753 249 aaKnown RBP19.14■□□□□ 0.65
CCDC28A-202ENST00000611852 MTFR1Q15390 333 aa19.14■□□□□ 0.65
CCDC28A-202ENST00000611852 NTRK3Q16288 839 aa19.14■□□□□ 0.65
CCDC28A-202ENST00000611852 MAP3K21Q5TCX8 1036 aa19.14■□□□□ 0.65
CCDC28A-202ENST00000611852 MFSD14CQ5VZR4 134 aa19.14■□□□□ 0.65
CCDC28A-202ENST00000611852 SLC30A10Q6XR72 485 aa19.14■□□□□ 0.65
CCDC28A-202ENST00000611852 RNF207Q6ZRF8 634 aa19.14■□□□□ 0.65
CCDC28A-202ENST00000611852 MAF1Q9H063 256 aa19.14■□□□□ 0.65
CCDC28A-202ENST00000611852 V9GY48 417 aaPredicted RBP19.14■□□□□ 0.65
CCDC28A-202ENST00000611852 PRKAR2AP13861 404 aaKnown RBP19.13■□□□□ 0.65
CCDC28A-202ENST00000611852 CYP2C19P33261 490 aa19.13■□□□□ 0.65
CCDC28A-202ENST00000611852 CACNB2Q08289 660 aaPredicted RBP19.13■□□□□ 0.65
CCDC28A-202ENST00000611852 STK3Q13188 491 aa19.13■□□□□ 0.65
CCDC28A-202ENST00000611852 ZNF467Q7Z7K2 595 aaPredicted RBP19.13■□□□□ 0.65
CCDC28A-202ENST00000611852 MCF2L2Q86YR7 1114 aa19.13■□□□□ 0.65
CCDC28A-202ENST00000611852 TBC1D5Q92609 795 aa19.13■□□□□ 0.65
CCDC28A-202ENST00000611852 TINF2Q9BSI4 451 aa19.13■□□□□ 0.65
CCDC28A-202ENST00000611852 LCTP09848 1927 aa19.13■□□□□ 0.65
CCDC28A-202ENST00000611852 ASTN1O14525 1302 aa19.12■□□□□ 0.65
CCDC28A-202ENST00000611852 SOWAHBA6NEL2 793 aa19.12■□□□□ 0.65
CCDC28A-202ENST00000611852 CCDC85CA6NKD9 419 aa19.12■□□□□ 0.65
CCDC28A-202ENST00000611852 CALML3P27482 149 aa19.12■□□□□ 0.65
CCDC28A-202ENST00000611852 MAMDC4Q6UXC1 1216 aa19.12■□□□□ 0.65
CCDC28A-202ENST00000611852 NOL8Q76FK4 1167 aaKnown RBP19.12■□□□□ 0.65
CCDC28A-202ENST00000611852 MSL3Q8N5Y2 521 aaKnown RBP19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms