RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 KLRC3Q07444 240 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 DLGAP5Q15398 846 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 E2F4Q16254 413 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 PDXDC2PQ6P474 469 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 ZFP91Q96JP5 570 aaPredicted RBP12.55□□□□□ -0.4
TCOF1-203ENST00000394269 KANSL2Q9H9L4 492 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.55□□□□□ -0.4
TCOF1-203ENST00000394269 LRWD1Q9UFC0 647 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 NT5DC1Q5TFE4 455 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 CDAN1Q8IWY9 1227 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 TRIML1Q8N9V2 468 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 NELFBQ8WX92 580 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 DHX36Q9H2U1 1008 aaKnown RBP12.55□□□□□ -0.4
TCOF1-203ENST00000394269 GTPBP6O43824 516 aaPredicted RBP12.55□□□□□ -0.4
TCOF1-203ENST00000394269 JAG1P78504 1218 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 RAD51AP2Q09MP3 1159 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 QRICH1Q2TAL8 776 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 CEP135Q66GS9 1140 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 CCDC17Q96LX7 622 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 INTS13Q9NVM9 706 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 PPP1R3GB7ZBB8 358 aa12.54□□□□□ -0.4
TCOF1-203ENST00000394269 N4BP3O15049 544 aa12.54□□□□□ -0.4
TCOF1-203ENST00000394269 PRCPP42785 496 aa12.54□□□□□ -0.4
TCOF1-203ENST00000394269 CC2D2BQ6DHV5 1058 aa12.54□□□□□ -0.4
TCOF1-203ENST00000394269 TAB2Q9NYJ8 693 aa12.54□□□□□ -0.4
TCOF1-203ENST00000394269 IMPACTQ9P2X3 320 aa12.54□□□□□ -0.4
TCOF1-203ENST00000394269 ZBTB5O15062 677 aa12.54□□□□□ -0.4
TCOF1-203ENST00000394269 ECE1P42892 770 aa12.54□□□□□ -0.4
TCOF1-203ENST00000394269 MRPL12P52815 198 aaKnown RBP12.54□□□□□ -0.4
TCOF1-203ENST00000394269 NAALADL2Q58DX5 795 aa12.54□□□□□ -0.4
TCOF1-203ENST00000394269 GPATCH4Q5T3I0 446 aaKnown RBP12.54□□□□□ -0.4
TCOF1-203ENST00000394269 SPATA1Q5VX52 437 aa12.54□□□□□ -0.4
TCOF1-203ENST00000394269 SH3RF1Q7Z6J0 888 aa12.54□□□□□ -0.4
TCOF1-203ENST00000394269 FCHSD1Q86WN1 690 aa12.54□□□□□ -0.4
TCOF1-203ENST00000394269 VSTM4Q8IW00 320 aa12.54□□□□□ -0.4
TCOF1-203ENST00000394269 CCDC150Q8NCX0 1101 aa12.54□□□□□ -0.4
TCOF1-203ENST00000394269 CUL5Q93034 780 aa12.54□□□□□ -0.4
TCOF1-203ENST00000394269 HOXA13P31271 388 aaPredicted RBP12.53□□□□□ -0.4
TCOF1-203ENST00000394269 KMT5BQ4FZB7 885 aa12.53□□□□□ -0.4
TCOF1-203ENST00000394269 CALML4Q96GE6 196 aa12.53□□□□□ -0.4
TCOF1-203ENST00000394269 ZHX3Q9H4I2 956 aa12.53□□□□□ -0.4
TCOF1-203ENST00000394269 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.53□□□□□ -0.4
TCOF1-203ENST00000394269 V9GYY5 206 aaPredicted RBP12.53□□□□□ -0.4
TCOF1-203ENST00000394269 PDE4DQ08499 809 aa12.53□□□□□ -0.4
TCOF1-203ENST00000394269 PAK1Q13153 545 aa12.53□□□□□ -0.4
TCOF1-203ENST00000394269 CDC37Q16543 378 aaPredicted RBP12.53□□□□□ -0.4
TCOF1-203ENST00000394269 CCAR2Q8N163 923 aaKnown RBP12.53□□□□□ -0.4
TCOF1-203ENST00000394269 SPATA20Q8TB22 786 aa12.53□□□□□ -0.4
TCOF1-203ENST00000394269 TMEM39BQ9GZU3 492 aa12.53□□□□□ -0.4
TCOF1-203ENST00000394269 SERPINA10Q9UK55 444 aa12.53□□□□□ -0.4
TCOF1-203ENST00000394269 ERCC5P28715 1186 aaPredicted RBP12.53□□□□□ -0.4
TCOF1-203ENST00000394269 FILIP1LQ4L180 1135 aa12.53□□□□□ -0.4
TCOF1-203ENST00000394269 PPFIBP1Q86W92 1011 aa12.53□□□□□ -0.4
TCOF1-203ENST00000394269 DAGLBQ8NCG7 672 aa12.53□□□□□ -0.4
TCOF1-203ENST00000394269 LRRC15Q8TF66 581 aa12.53□□□□□ -0.4
TCOF1-203ENST00000394269 C7orf43Q8WVR3 580 aa12.53□□□□□ -0.4
TCOF1-203ENST00000394269 IGKV6D-41A0A0C4DH26 115 aa12.52□□□□□ -0.4
TCOF1-203ENST00000394269 NT5C2P49902 561 aa12.52□□□□□ -0.4
TCOF1-203ENST00000394269 HSP90AA2PQ14568 343 aaPredicted RBP12.52□□□□□ -0.4
TCOF1-203ENST00000394269 RRP1BQ14684 758 aaKnown RBP12.52□□□□□ -0.4
TCOF1-203ENST00000394269 TMEM266Q2M3C6 531 aa12.52□□□□□ -0.4
TCOF1-203ENST00000394269 CCDC93Q567U6 631 aa12.52□□□□□ -0.4
TCOF1-203ENST00000394269 SPECC1LQ69YQ0 1117 aa12.52□□□□□ -0.4
TCOF1-203ENST00000394269 SNX29Q8TEQ0 813 aa12.52□□□□□ -0.4
TCOF1-203ENST00000394269 TRIM47Q96LD4 638 aa12.52□□□□□ -0.4
TCOF1-203ENST00000394269 SLC39A2Q9NP94 309 aa12.52□□□□□ -0.4
TCOF1-203ENST00000394269 DDX25Q9UHL0 483 aaKnown RBP12.52□□□□□ -0.4
TCOF1-203ENST00000394269 SHTN1A0MZ66 631 aa12.52□□□□□ -0.41
TCOF1-203ENST00000394269 NDUFB10O96000 172 aa12.52□□□□□ -0.41
TCOF1-203ENST00000394269 FCER1AP12319 257 aa12.52□□□□□ -0.41
TCOF1-203ENST00000394269 MCM6Q14566 821 aa12.52□□□□□ -0.41
TCOF1-203ENST00000394269 E4F1Q66K89 784 aaPredicted RBP12.52□□□□□ -0.41
TCOF1-203ENST00000394269 CCDC174Q6PII3 467 aa12.52□□□□□ -0.41
TCOF1-203ENST00000394269 IGSF22Q8N9C0 903 aa12.52□□□□□ -0.41
TCOF1-203ENST00000394269 CCDC112Q8NEF3 446 aa12.52□□□□□ -0.41
TCOF1-203ENST00000394269 SUPT20HQ8NEM7 779 aa12.52□□□□□ -0.41
TCOF1-203ENST00000394269 ACER1Q8TDN7 264 aa12.52□□□□□ -0.41
TCOF1-203ENST00000394269 NUDT12Q9BQG2 462 aa12.52□□□□□ -0.41
TCOF1-203ENST00000394269 DESI2Q9BSY9 194 aa12.52□□□□□ -0.41
TCOF1-203ENST00000394269 ECM29Q5VYK3 1845 aa12.52□□□□□ -0.41
TCOF1-203ENST00000394269 KIAA1551Q9HCM1 1747 aa12.52□□□□□ -0.41
TCOF1-203ENST00000394269 ECM2O94769 699 aaPredicted RBP12.52□□□□□ -0.41
TCOF1-203ENST00000394269 NAA30Q147X3 362 aaPredicted RBP12.52□□□□□ -0.41
TCOF1-203ENST00000394269 SYT10Q6XYQ8 523 aa12.52□□□□□ -0.41
TCOF1-203ENST00000394269 GPIHBP1Q8IV16 184 aa12.52□□□□□ -0.41
TCOF1-203ENST00000394269 POLD4Q9HCU8 107 aa12.52□□□□□ -0.41
TCOF1-203ENST00000394269 ZNF18P17022 549 aa12.51□□□□□ -0.41
TCOF1-203ENST00000394269 UBXN2AP68543 259 aa12.51□□□□□ -0.41
TCOF1-203ENST00000394269 SIAH1Q8IUQ4 282 aa12.51□□□□□ -0.41
TCOF1-203ENST00000394269 ELOA2Q8IYF1 753 aaPredicted RBP12.51□□□□□ -0.41
TCOF1-203ENST00000394269 MYRIPQ8NFW9 859 aa12.51□□□□□ -0.41
TCOF1-203ENST00000394269 KIFC2Q96AC6 838 aa12.51□□□□□ -0.41
TCOF1-203ENST00000394269 PYM1Q9BRP8 204 aaKnown RBP12.51□□□□□ -0.41
TCOF1-203ENST00000394269 SRRTQ9BXP5 876 aaKnown RBP12.51□□□□□ -0.41
TCOF1-203ENST00000394269 EXOC1Q9NV70 894 aa12.51□□□□□ -0.41
TCOF1-203ENST00000394269 RMND1Q9NWS8 449 aa12.51□□□□□ -0.41
TCOF1-203ENST00000394269 TBC1D7Q9P0N9 293 aa12.51□□□□□ -0.41
TCOF1-203ENST00000394269 HDAC9Q9UKV0 1011 aa12.51□□□□□ -0.41
TCOF1-203ENST00000394269 A0A1W2PRG0 241 aa12.51□□□□□ -0.41
TCOF1-203ENST00000394269 PMS1P54277 932 aaKnown RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms