RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 CD4P01730 458 aa8.82□□□□□ -1
VPS4A-203ENST00000564399 ATP2A2P16615 1042 aaKnown RBP8.82□□□□□ -1
VPS4A-203ENST00000564399 CDK8P49336 464 aa8.82□□□□□ -1
VPS4A-203ENST00000564399 CXCL17Q6UXB2 119 aa8.82□□□□□ -1
VPS4A-203ENST00000564399 ARMCX2Q7L311 632 aa8.82□□□□□ -1
VPS4A-203ENST00000564399 ZNF467Q7Z7K2 595 aaPredicted RBP8.82□□□□□ -1
VPS4A-203ENST00000564399 ANKRD35Q8N283 1001 aa8.82□□□□□ -1
VPS4A-203ENST00000564399 TMEM57Q8N5G2 664 aa8.82□□□□□ -1
VPS4A-203ENST00000564399 REPS2Q8NFH8 660 aa8.82□□□□□ -1
VPS4A-203ENST00000564399 SLF1Q9BQI6 1058 aa8.82□□□□□ -1
VPS4A-203ENST00000564399 ARMT1Q9H993 441 aa8.82□□□□□ -1
VPS4A-203ENST00000564399 CERS4Q9HA82 394 aa8.82□□□□□ -1
VPS4A-203ENST00000564399 DNAJC25-GNG10A0A024R161 153 aa8.81□□□□□ -1
VPS4A-203ENST00000564399 CYP2D7A0A087X1C5 515 aa8.81□□□□□ -1
VPS4A-203ENST00000564399 ZNF316A6NFI3 1004 aaPredicted RBP8.81□□□□□ -1
VPS4A-203ENST00000564399 GOLIM4O00461 696 aa8.81□□□□□ -1
VPS4A-203ENST00000564399 PRKAB2O43741 272 aa8.81□□□□□ -1
VPS4A-203ENST00000564399 ZBED4O75132 1171 aa8.81□□□□□ -1
VPS4A-203ENST00000564399 CABYRO75952 493 aa8.81□□□□□ -1
VPS4A-203ENST00000564399 TNFAIP2Q03169 654 aa8.81□□□□□ -1
VPS4A-203ENST00000564399 ITGA7Q13683 1181 aa8.81□□□□□ -1
VPS4A-203ENST00000564399 TMEM67Q5HYA8 995 aa8.81□□□□□ -1
VPS4A-203ENST00000564399 PRPF38AQ8NAV1 312 aaKnown RBP8.81□□□□□ -1
VPS4A-203ENST00000564399 DDRGK1Q96HY6 314 aa8.81□□□□□ -1
VPS4A-203ENST00000564399 DNAJC2Q99543 621 aaKnown RBP8.81□□□□□ -1
VPS4A-203ENST00000564399 NUP88Q99567 741 aaPredicted RBP8.81□□□□□ -1
VPS4A-203ENST00000564399 NOC4LQ9BVI4 516 aaKnown RBP8.81□□□□□ -1
VPS4A-203ENST00000564399 AP5M1Q9H0R1 490 aa8.81□□□□□ -1
VPS4A-203ENST00000564399 BCL11AQ9H165 835 aa8.81□□□□□ -1
VPS4A-203ENST00000564399 TRPV6Q9H1D0 765 aa8.81□□□□□ -1
VPS4A-203ENST00000564399 ATP8A2Q9NTI2 1148 aa8.81□□□□□ -1
VPS4A-203ENST00000564399 COG5Q9UP83 839 aa8.81□□□□□ -1
VPS4A-203ENST00000564399 RIPK3Q9Y572 518 aa8.81□□□□□ -1
VPS4A-203ENST00000564399 MTCH2Q9Y6C9 303 aa8.81□□□□□ -1
VPS4A-203ENST00000564399 SCN5AQ14524 2016 aa8.81□□□□□ -1
VPS4A-203ENST00000564399 MYH4Q9Y623 1939 aa8.8□□□□□ -1
VPS4A-203ENST00000564399 FAM86C2PA6NEL3 165 aa8.8□□□□□ -1
VPS4A-203ENST00000564399 USP17L12C9JPN9 530 aa8.8□□□□□ -1
VPS4A-203ENST00000564399 USP17L21D6R901 530 aa8.8□□□□□ -1
VPS4A-203ENST00000564399 SMIM22K7EJ46 135 aa8.8□□□□□ -1
VPS4A-203ENST00000564399 CTAGE5O15320 804 aa8.8□□□□□ -1
VPS4A-203ENST00000564399 ZEB2O60315 1214 aa8.8□□□□□ -1
VPS4A-203ENST00000564399 MBD4O95243 580 aa8.8□□□□□ -1
VPS4A-203ENST00000564399 CA3P07451 260 aa8.8□□□□□ -1
VPS4A-203ENST00000564399 C12orf60Q5U649 245 aa8.8□□□□□ -1
VPS4A-203ENST00000564399 C16orf86Q6ZW13 317 aa8.8□□□□□ -1
VPS4A-203ENST00000564399 ALYREFQ86V81 257 aaKnown RBP8.8□□□□□ -1
VPS4A-203ENST00000564399 ERC1Q8IUD2 1116 aa8.8□□□□□ -1
VPS4A-203ENST00000564399 CCDC144CPQ8IYA2 1237 aa8.8□□□□□ -1
VPS4A-203ENST00000564399 SCLYQ96I15 445 aa8.8□□□□□ -1
VPS4A-203ENST00000564399 RAVER2Q9HCJ3 691 aaKnown RBP8.8□□□□□ -1
VPS4A-203ENST00000564399 IL1RAPL2Q9NP60 686 aa8.8□□□□□ -1
VPS4A-203ENST00000564399 FBXO40Q9UH90 709 aa8.8□□□□□ -1
VPS4A-203ENST00000564399 EXOC6BQ9Y2D4 811 aa8.8□□□□□ -1
VPS4A-203ENST00000564399 TRIP12Q14669 1992 aaPredicted RBP8.8□□□□□ -1
VPS4A-203ENST00000564399 TET1Q8NFU7 2136 aa8.8□□□□□ -1
VPS4A-203ENST00000564399 LRRC37A2A6NM11 1700 aa8.8□□□□□ -1
VPS4A-203ENST00000564399 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.79□□□□□ -1
VPS4A-203ENST00000564399 TCRBV5S4A2TA0A5A2 114 aa8.79□□□□□ -1
VPS4A-203ENST00000564399 DYNC1LI2O43237 492 aaPredicted RBP8.79□□□□□ -1
VPS4A-203ENST00000564399 TLL1O43897 1013 aa8.79□□□□□ -1
VPS4A-203ENST00000564399 GPR37L1O60883 481 aa8.79□□□□□ -1
VPS4A-203ENST00000564399 POU3F3P20264 500 aaPredicted RBP8.79□□□□□ -1
VPS4A-203ENST00000564399 C1QBPQ07021 282 aaKnown RBP8.79□□□□□ -1
VPS4A-203ENST00000564399 TTLL4Q14679 1199 aa8.79□□□□□ -1
VPS4A-203ENST00000564399 FSCN1Q16658 493 aaKnown RBP8.79□□□□□ -1
VPS4A-203ENST00000564399 ZKSCAN2Q63HK3 967 aa8.79□□□□□ -1
VPS4A-203ENST00000564399 KRT40Q6A162 431 aa8.79□□□□□ -1
VPS4A-203ENST00000564399 DEFB128Q7Z7B8 93 aa8.79□□□□□ -1
VPS4A-203ENST00000564399 TLK2Q86UE8 772 aa8.79□□□□□ -1
VPS4A-203ENST00000564399 SLC43A3Q8NBI5 491 aa8.79□□□□□ -1
VPS4A-203ENST00000564399 CHST13Q8NET6 341 aa8.79□□□□□ -1
VPS4A-203ENST00000564399 ARNTL2Q8WYA1 636 aa8.79□□□□□ -1
VPS4A-203ENST00000564399 HLA-CQ95604 372 aa8.79□□□□□ -1
VPS4A-203ENST00000564399 KIFC2Q96AC6 838 aa8.79□□□□□ -1
VPS4A-203ENST00000564399 SEZ6LQ9BYH1 1024 aa8.79□□□□□ -1
VPS4A-203ENST00000564399 WNT8AQ9H1J5 351 aa8.79□□□□□ -1
VPS4A-203ENST00000564399 HOMER2Q9NSB8 354 aa8.79□□□□□ -1
VPS4A-203ENST00000564399 TRANK1O15050 2925 aa8.79□□□□□ -1
VPS4A-203ENST00000564399 CACNA1AO00555 2505 aa8.79□□□□□ -1
VPS4A-203ENST00000564399 ASTN1O14525 1302 aa8.79□□□□□ -1
VPS4A-203ENST00000564399 EPOPA6NHQ4 379 aa8.78□□□□□ -1
VPS4A-203ENST00000564399 ASB14A6NK59 587 aa8.78□□□□□ -1
VPS4A-203ENST00000564399 KIF28PB7ZC32 967 aa8.78□□□□□ -1
VPS4A-203ENST00000564399 F5H6K3 240 aa8.78□□□□□ -1
VPS4A-203ENST00000564399 ATP2A1O14983 1001 aa8.78□□□□□ -1
VPS4A-203ENST00000564399 B4GALT4O60513 344 aa8.78□□□□□ -1
VPS4A-203ENST00000564399 NDUFB10O96000 172 aa8.78□□□□□ -1
VPS4A-203ENST00000564399 ACTN1P12814 892 aa8.78□□□□□ -1
VPS4A-203ENST00000564399 PSMC6P62333 389 aa8.78□□□□□ -1
VPS4A-203ENST00000564399 CNTN2Q02246 1040 aa8.78□□□□□ -1
VPS4A-203ENST00000564399 KLRC3Q07444 240 aa8.78□□□□□ -1
VPS4A-203ENST00000564399 SLFNL1Q499Z3 407 aa8.78□□□□□ -1
VPS4A-203ENST00000564399 ITPRIPQ8IWB1 547 aa8.78□□□□□ -1
VPS4A-203ENST00000564399 FTSJ3Q8IY81 847 aaKnown RBP8.78□□□□□ -1
VPS4A-203ENST00000564399 STK11IPQ8N1F8 1099 aa8.78□□□□□ -1
VPS4A-203ENST00000564399 KHSRPQ92945 711 aaKnown RBP eCLIP8.78□□□□□ -1
VPS4A-203ENST00000564399 FGD4Q96M96 766 aa8.78□□□□□ -1
VPS4A-203ENST00000564399 ISY1Q9ULR0 285 aaKnown RBP8.78□□□□□ -1
VPS4A-203ENST00000564399 SLC4A4Q9Y6R1 1079 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms