RNA–Protein interactions for RNA: ENST00000510737.1

USP53-206, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 5

Gene USP53, Length 534 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-206ENST00000510737 HECW2Q9P2P5 1572 aa11.29□□□□□ -0.6
USP53-206ENST00000510737 HRKO00198 91 aa11.29□□□□□ -0.6
USP53-206ENST00000510737 SHOXO15266 292 aa11.29□□□□□ -0.6
USP53-206ENST00000510737 PI3P19957 117 aa11.29□□□□□ -0.6
USP53-206ENST00000510737 ZNF165P49910 485 aa11.29□□□□□ -0.6
USP53-206ENST00000510737 YBX1P67809 324 aaKnown RBP11.29□□□□□ -0.6
USP53-206ENST00000510737 POLA1P09884 1462 aaPredicted RBP11.28□□□□□ -0.6
USP53-206ENST00000510737 FAM86C2PA6NEL3 165 aa11.28□□□□□ -0.6
USP53-206ENST00000510737 C9IYK1 514 aa11.28□□□□□ -0.6
USP53-206ENST00000510737 PRRG2O14669 202 aa11.28□□□□□ -0.6
USP53-206ENST00000510737 ZNF205O95201 554 aa11.28□□□□□ -0.6
USP53-206ENST00000510737 BMP7P18075 431 aa11.28□□□□□ -0.6
USP53-206ENST00000510737 ERVFRD-1P60508 538 aa11.28□□□□□ -0.6
USP53-206ENST00000510737 CRTC3Q6UUV7 619 aa11.28□□□□□ -0.6
USP53-206ENST00000510737 SLCO6A1Q86UG4 719 aa11.28□□□□□ -0.6
USP53-206ENST00000510737 TMEM52Q8NDY8 209 aa11.28□□□□□ -0.6
USP53-206ENST00000510737 PARD6AQ9NPB6 346 aa11.28□□□□□ -0.6
USP53-206ENST00000510737 TNFRSF10DQ9UBN6 386 aa11.28□□□□□ -0.6
USP53-206ENST00000510737 TOP2AP11388 1531 aaKnown RBP11.28□□□□□ -0.6
USP53-206ENST00000510737 B8ZZF3 427 aa11.27□□□□□ -0.61
USP53-206ENST00000510737 BMP8BP34820 402 aa11.27□□□□□ -0.61
USP53-206ENST00000510737 AUHQ13825 339 aaKnown RBP11.27□□□□□ -0.61
USP53-206ENST00000510737 ZNF326Q5BKZ1 582 aaKnown RBP11.27□□□□□ -0.61
USP53-206ENST00000510737 KCNC2Q96PR1 638 aa11.27□□□□□ -0.61
USP53-206ENST00000510737 KLHL14Q9P2G3 628 aa11.27□□□□□ -0.61
USP53-206ENST00000510737 PCDHB12Q9Y5F1 795 aa11.27□□□□□ -0.61
USP53-206ENST00000510737 SOGA1O94964 1423 aa11.26□□□□□ -0.61
USP53-206ENST00000510737 TRIM13O60858 407 aa11.26□□□□□ -0.61
USP53-206ENST00000510737 BUD31P41223 144 aaPredicted RBP11.26□□□□□ -0.61
USP53-206ENST00000510737 CTSWP56202 376 aa11.26□□□□□ -0.61
USP53-206ENST00000510737 LRRFIP1Q32MZ4 808 aaKnown RBP11.26□□□□□ -0.61
USP53-206ENST00000510737 ZNF385BQ569K4 471 aa11.26□□□□□ -0.61
USP53-206ENST00000510737 AP5S1Q9NUS5 200 aa11.26□□□□□ -0.61
USP53-206ENST00000510737 FBXL21Q9UKT6 434 aa11.26□□□□□ -0.61
USP53-206ENST00000510737 ADAMTS20P59510 1910 aa11.26□□□□□ -0.61
USP53-206ENST00000510737 MAGI1Q96QZ7 1491 aaPredicted RBP11.25□□□□□ -0.61
USP53-206ENST00000510737 A0A0G2JLL6 359 aaPredicted RBP11.25□□□□□ -0.61
USP53-206ENST00000510737 VAV1P15498 845 aa11.25□□□□□ -0.61
USP53-206ENST00000510737 CDR1P51861 262 aa11.25□□□□□ -0.61
USP53-206ENST00000510737 RTP2Q5QGT7 225 aa11.25□□□□□ -0.61
USP53-206ENST00000510737 KIAA0825Q8IV33 1275 aa11.25□□□□□ -0.61
USP53-206ENST00000510737 SIGLEC10Q96LC7 697 aa11.25□□□□□ -0.61
USP53-206ENST00000510737 SPON2Q9BUD6 331 aa11.25□□□□□ -0.61
USP53-206ENST00000510737 CDADC1Q9BWV3 514 aa11.25□□□□□ -0.61
USP53-206ENST00000510737 SIRT5Q9NXA8 310 aa11.25□□□□□ -0.61
USP53-206ENST00000510737 TCERG1LQ5VWI1 586 aa11.24□□□□□ -0.61
USP53-206ENST00000510737 MARCH10Q8NA82 808 aaPredicted RBP11.24□□□□□ -0.61
USP53-206ENST00000510737 DACT3Q96B18 629 aaPredicted RBP11.24□□□□□ -0.61
USP53-206ENST00000510737 KRTAP9-3Q9BYQ3 159 aa11.24□□□□□ -0.61
USP53-206ENST00000510737 SUCOQ9UBS9 1254 aaKnown RBP11.24□□□□□ -0.61
USP53-206ENST00000510737 CCDC88BA6NC98 1476 aa11.24□□□□□ -0.61
USP53-206ENST00000510737 WDR97A6NE52 1622 aa11.24□□□□□ -0.61
USP53-206ENST00000510737 IRS4O14654 1257 aaPredicted RBP11.23□□□□□ -0.61
USP53-206ENST00000510737 N4BP3O15049 544 aa11.23□□□□□ -0.61
USP53-206ENST00000510737 LCE5AQ5TCM9 118 aa11.23□□□□□ -0.61
USP53-206ENST00000510737 GALNT18Q6P9A2 607 aa11.23□□□□□ -0.61
USP53-206ENST00000510737 PPFIBP1Q86W92 1011 aa11.23□□□□□ -0.61
USP53-206ENST00000510737 TMEFF1Q8IYR6 380 aa11.23□□□□□ -0.61
USP53-206ENST00000510737 ZNRF3Q9ULT6 936 aa11.23□□□□□ -0.61
USP53-206ENST00000510737 IRAK3Q9Y616 596 aa11.23□□□□□ -0.61
USP53-206ENST00000510737 TAF6LQ9Y6J9 622 aa11.23□□□□□ -0.61
USP53-206ENST00000510737 SYNJ2O15056 1496 aa11.23□□□□□ -0.61
USP53-206ENST00000510737 KDM6BO15054 1643 aa11.23□□□□□ -0.61
USP53-206ENST00000510737 PRKCAP17252 672 aa11.22□□□□□ -0.61
USP53-206ENST00000510737 TMEM87AQ8NBN3 555 aa11.22□□□□□ -0.61
USP53-206ENST00000510737 JMJD8Q96S16 334 aa11.22□□□□□ -0.61
USP53-206ENST00000510737 ZCCHC4Q9H5U6 513 aa11.22□□□□□ -0.61
USP53-206ENST00000510737 WTIPA6NIX2 430 aaPredicted RBP11.21□□□□□ -0.61
USP53-206ENST00000510737 TDRD10Q5VZ19 366 aaKnown RBP11.21□□□□□ -0.61
USP53-206ENST00000510737 INTS3Q68E01 1043 aaKnown RBP11.21□□□□□ -0.61
USP53-206ENST00000510737 C7orf61Q8IZ16 206 aa11.21□□□□□ -0.61
USP53-206ENST00000510737 ACSL6Q9UKU0 697 aa11.21□□□□□ -0.61
USP53-206ENST00000510737 RFXAPO00287 272 aa11.2□□□□□ -0.62
USP53-206ENST00000510737 ZNF16P17020 682 aaPredicted RBP11.2□□□□□ -0.62
USP53-206ENST00000510737 IGDCC3Q8IVU1 814 aa11.2□□□□□ -0.62
USP53-206ENST00000510737 FBXO41Q8TF61 875 aa11.2□□□□□ -0.62
USP53-206ENST00000510737 SLC12A9Q9BXP2 914 aa11.2□□□□□ -0.62
USP53-206ENST00000510737 TNFRSF12AQ9NP84 129 aa11.2□□□□□ -0.62
USP53-206ENST00000510737 PRR13Q9NZ81 148 aa11.2□□□□□ -0.62
USP53-206ENST00000510737 IMPACTQ9P2X3 320 aa11.2□□□□□ -0.62
USP53-206ENST00000510737 ZYXQ15942 572 aaKnown RBP11.19□□□□□ -0.62
USP53-206ENST00000510737 ZNF394Q53GI3 561 aa11.19□□□□□ -0.62
USP53-206ENST00000510737 NUP43Q8NFH3 380 aa11.19□□□□□ -0.62
USP53-206ENST00000510737 MZB1Q8WU39 189 aa11.19□□□□□ -0.62
USP53-206ENST00000510737 ADGRL1O94910 1474 aa11.19□□□□□ -0.62
USP53-206ENST00000510737 GRIN2BQ13224 1484 aa11.19□□□□□ -0.62
USP53-206ENST00000510737 A0A1W2PQ45 241 aaPredicted RBP11.18□□□□□ -0.62
USP53-206ENST00000510737 A0A1W2PQY0 241 aa11.18□□□□□ -0.62
USP53-206ENST00000510737 MSL3P1P0C860 447 aa11.18□□□□□ -0.62
USP53-206ENST00000510737 VMACQ2NL98 169 aa11.18□□□□□ -0.62
USP53-206ENST00000510737 DCAF15Q66K64 600 aa11.18□□□□□ -0.62
USP53-206ENST00000510737 TMC6Q7Z403 805 aa11.18□□□□□ -0.62
USP53-206ENST00000510737 LDHDQ86WU2 507 aa11.18□□□□□ -0.62
USP53-206ENST00000510737 PCDHGB7Q9Y5F8 929 aa11.18□□□□□ -0.62
USP53-206ENST00000510737 DIP2BQ9P265 1576 aa11.18□□□□□ -0.62
USP53-206ENST00000510737 ABCC10Q5T3U5 1492 aa11.18□□□□□ -0.62
USP53-206ENST00000510737 LMTK3Q96Q04 1460 aa11.18□□□□□ -0.62
USP53-206ENST00000510737 NUDT19A8MXV4 375 aa11.17□□□□□ -0.62
USP53-206ENST00000510737 H0Y8X5 98 aa11.17□□□□□ -0.62
USP53-206ENST00000510737 MPOP05164 745 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms